TkA04G112370 | RubberDandelionOmics

Gene overview

TkA04G112370

Reference: TK1151 Chr: Chr04 Coordinates: 29198451-29199125 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

645 bp · TkA04G112370|TK1151|cDNA

ATGGCATCGTCTTCAAATTCGCCATGTGCAGCCTGTAAGTTCTTGAGACGAAAATGCCAACCAGAATGTGTTTTTGCACCTTACTTTCCACCAGATCAGCCTCAAAAATTCGCAAATGTTCACAAAGTATTTGGAGCCAGCAACGTAACAAAGCTTCTAAATGAACTCCACCCTCACCAACGAGAAGATGCTGTAAATTCTCTAGCTTATGAAGCAGATATGAGGCTCCGGGATCCAGTTTACGGTTGTGTTGGTGTCAT...

CDS

Download CDS FASTA

645 bp · TkA04G112370|TK1151|CDS

ATGGCATCGTCTTCAAATTCGCCATGTGCAGCCTGTAAGTTCTTGAGACGAAAATGCCAACCAGAATGTGTTTTTGCACCTTACTTTCCACCAGATCAGCCTCAAAAATTCGCAAATGTTCACAAAGTATTTGGAGCCAGCAACGTAACAAAGCTTCTAAATGAACTCCACCCTCACCAACGAGAAGATGCTGTAAATTCTCTAGCTTATGAAGCAGATATGAGGCTCCGGGATCCAGTTTACGGTTGTGTTGGTGTCAT...

Protein

Download Protein FASTA

214 aa · TkA04G112370|TK1151|PROTEIN

MASSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQVDLTYAKSELSKYQNHNLNGSATQGLIAAAAAAAATHHQTLGNNLISCCGGGVTRDHLYHHHHPSFFAARDQQTSAIRAFDVNNNYDATASIGQHSQFQQPRAAGTDDRPTPIDPS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G112370`
TK1151 ID	TkA04G112370
OH-1004 ID	LXL04_030732
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	68.600
Protein coverage (%)	TK1151 56.542 / OH-1004 25.420 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G112370

Location Chr04:29198451-29199125 (-)

Description Similar to LOB: Protein LATERAL ORGAN BOUNDARIES

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g65620`	Negative regulator of cell proliferation in the adaxial side of leaves.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2WXT0`	Negative regulator of cell proliferation in the adaxial side of leaves.	No verified direct reference in this release
`Os01g0889400`	Negative regulator of cell proliferation in the adaxial side of leaves.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030732 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009799 specification of symmetry Biological Process

GO:0009943 adaxial/abaxial axis specification Biological Process

GO:0009944 polarity specification of adaxial/abaxial axis Biological Process

GO:0009954 proximal/distal pattern formation Biological Process

GO:0010199 organ boundary specification between lateral organs and the meristem Biological Process

GO:0048441 petal development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0001216 DNA-binding transcription activator activity Molecular Function

KEGG gene cross-reference

ath:AT1G65620

ath:AT3G27650

ath:AT5G63090

dosa:Os01g0889400

zma:732739

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.972

Rank 1 · TkA04G112370 · TK1151

Cytoplasm0.085

Rank 2 · TkA04G112370 · TK1151

Cell membrane0.023

Rank 3 · TkA04G112370 · TK1151

Endoplasmic reticulum0.016

Rank 4 · TkA04G112370 · TK1151

Plastid0.010

Rank 5 · TkA04G112370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03195LOB8-105 aa

PF27769MED33_C86-171 aa

PF03458Gly_transporter143-169 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G112370	`PF03195`	LOB	8	105	2.1e-43	147.7
TkA04G112370	`PF27769`	MED33_C	86	171	0.13	12.7
TkA04G112370	`PF03458`	Gly_transporter	143	169	0.033	14.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O04479`	Arabidopsis thaliana	sp\|O04479\|AS2_ARATH Protein ASYMMETRIC LEAVES 2	60.300%	Swiss-Prot	High
`A2WXT0`	Oryza sativa subsp. indica	sp\|A2WXT0\|LBD6_ORYSI LOB domain-containing protein 6	82.900%	Swiss-Prot	Medium
`Q8LQH4`	Oryza sativa subsp. japonica	sp\|Q8LQH4\|LBD6_ORYSJ LOB domain-containing protein 6	82.900%	Swiss-Prot	Medium

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