TkA04G025010 | RubberDandelionOmics

Gene overview

TkA04G025010

Reference: TK1151 Chr: Chr04 Coordinates: 6514809-6516889 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1146 bp · TkA04G025010|TK1151|cDNA

TTTCTTATTAATTTCTTCCACAAACTGGAAATATGCATGTGAGAACTTTCTTGCATCGTCCTATCATTTTCAATCTGAGGAAGACCCATTAACCCAATAGTGGATACATACATTATACATACAATCAGATTATAAATTTGTTGGAAGTTGTAGAATTTAGCAATATATTTTCAAGGTTTATTCATGTTAGTCAGATGGGTACGTTTTCGCCCATGGACGATTTCAATAGTAATCATCACTTTCTTCGACCTTTTTTTCTT...

CDS

Download CDS FASTA

900 bp · TkA04G025010|TK1151|CDS

ATGTTAGTCAGATGGGTACGTTTTCGCCCATGGACGATTTCAATAGTAATCATCACTTTCTTCGACCTTTTTTTCTTCCTTAGCAACGCAGCAAGAACCGGTGGCTTGGATAAGACTGTTGCCTTTGATGAAAATTATAATGTAACTTGGGGAAATCACCATTCTAAGCTTCTTAATCAAGGAAAAGAGATTCAGTTGTTGTTGGATCAATCTTCAGGTGCCGGATTCGCGTCCAAATCATATTATGGATCTGGGTACTT...

Protein

Download Protein FASTA

299 aa · TkA04G025010|TK1151|PROTEIN

MLVRWVRFRPWTISIVIITFFDLFFFLSNAARTGGLDKTVAFDENYNVTWGNHHSKLLNQGKEIQLLLDQSSGAGFASKSYYGSGYFQMRIKLPVNDSGGVITAFYLFSNTSTHNELDFEFLGNRPGRPITLQTNVFAHGVGGREQKFTLWFDPGEDFHNYKLLWNHHQIVFFVDDTPIRLYRNNINKGVDYPNNTMEVKVSLWDGSSWATDGGQTKVNWSNGPIEAHFQDFKIDGCLSSVNNSNKDCFTQNYWWNNKTY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G025010`
TK1151 ID	TkA04G025010
OH-1004 ID	LXL04_036776
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	66.900
Protein coverage (%)	TK1151 96.990 / OH-1004 96.928 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G025010

Location Chr04:6514809-6516889 (+)

Description Similar to XTH2: Xyloglucan endotransglucosylase/hydrolase protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g13090`	May catalyze xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At3g25050`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At4g13080`	May catalyze xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At5g13870`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036776 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0030243 cellulose metabolic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0048573 photoperiodism, flowering Biological Process

GO:0071555 cell wall organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Molecular Function

GO:0016762 xyloglucan:xyloglucosyl transferase activity Molecular Function

KEGG gene cross-reference

ath:AT3G25050

ath:AT4G13080

ath:AT4G13090

nta:107785465

sly:544272

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.330

Rank 1 · TkA04G025010 · TK1151

Extracellular0.256

Rank 2 · TkA04G025010 · TK1151

Golgi apparatus0.169

Rank 3 · TkA04G025010 · TK1151

Cytoplasm0.144

Rank 4 · TkA04G025010 · TK1151

Endoplasmic reticulum0.142

Rank 5 · TkA04G025010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00722Glyco_hydro_1643-221 aa

PF00722Glyco_hydro_16249-281 aa

PF06955XET_C251-297 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G025010	`PF00722`	Glyco_hydro_16	43	221	1.8e-59	200.9
TkA04G025010	`PF00722`	Glyco_hydro_16	249	281	1.8e-59	200.9
TkA04G025010	`PF06955`	XET_C	251	297	6.7e-18	64.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SV60`	Arabidopsis thaliana	sp\|Q9SV60\|XTH2_ARATH Xyloglucan endotransglucosylase/hydrolase protein 2	54.700%	Swiss-Prot	High
`Q9LJR7`	Arabidopsis thaliana	sp\|Q9LJR7\|XTH3_ARATH Xyloglucan endotransglucosylase/hydrolase protein 3	54.900%	Swiss-Prot	High
`Q9SV61`	Arabidopsis thaliana	sp\|Q9SV61\|XTH1_ARATH Putative xyloglucan endotransglucosylase/hydrolase protein 1	53.100%	Swiss-Prot	High
`Q9XIW1`	Arabidopsis thaliana	sp\|Q9XIW1\|XTH5_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 5	51.200%	Swiss-Prot	High

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