TkA03G618060 | RubberDandelionOmics

Gene overview

TkA03G618060

Reference: TK1151 Chr: Chr03 Coordinates: 157047872-157057897 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2847 bp · TkA03G618060|TK1151|cDNA

CAAATCCCCACTTCACTCACAAGCGAGACCAGCCACCTGATCTTCTCTCTGCGTTCTACCCGAATCAAACACATGACAAAGAATTACAATCTCAACCAATTAAAAATTTGATTCTACGGCCGTTTATCGTTATCATCATCATCATCGTTCGATTAAACTGATCTCAAACTCAAATTAGGTCAAAGCTACTGATCTCAATTTCGAGTTTTTCAAGTGAACCGGGTGAAAACGAAGCTTGGTCGTCAATCGCGTGCTCAAAT...

CDS

Download CDS FASTA

1908 bp · TkA03G618060|TK1151|CDS

ATGGGTATGAGAGAAATCAAGTCGCCTGAAGTTTTATCTGAGACGCCTGTGGTGATAAGAATGGATGAAAATCCCGAGTCATTAAAAAGTAAGAAGCTTGGGATGTATTTTGTTGAATCCGACAACAGGCGTTCCCCATTTGCTGGAGGCTATACCACCCTTGGTACCACACCTGTGAATATCCATGGGAAGCCTATCACCGATCTCTCCAAAACCGGGGGCTGGGTTGCAGCCTTCTTCATTTTTGGGAACGAAATGGC...

Protein

Download Protein FASTA

635 aa · TkA03G618060|TK1151|PROTEIN

MGMREIKSPEVLSETPVVIRMDENPESLKSKKLGMYFVESDNRRSPFAGGYTTLGTTPVNIHGKPITDLSKTGGWVAAFFIFGNEMAERMAYFGLSVNMVAFMFYVMHRPFSSSANAVNIFLGISQASSVLGGFLADAYLGRYWTIAIFTTIYLVGLTGITLCATLNVLVPNQDECNQLSLLLGSCEPAKPWQMLYLYTALYVTGFGAAGIRPCVSSFGADQFDERSRDYNSNLDRFFNLFYLSVTVGAIVAFTAVVYIQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G618060`
TK1151 ID	TkA03G618060
OH-1004 ID	LXL04_011768
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G618060

Location Chr03:157047872-157057897 (+)

Description Similar to NPF6.1: Protein NRT1/ PTR FAMILY 6.1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g13400`	Protein NRT1/ PTR FAMILY 6.1.	No verified direct reference in this release
`At3g54140`	Peptide transporter.	AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02224.x AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844
`At2g02040`	Peptide transporter.	No verified direct reference in this release
`At1g62200`	Protein NRT1/ PTR FAMILY 8.5.	No verified direct reference in this release
`At5g01180`	Peptide transporter.	AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011768 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006857 oligopeptide transport Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0015031 protein transport Biological Process

GO:0015833 peptide transport Biological Process

GO:0042938 dipeptide transport Biological Process

GO:0042939 tripeptide transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005774 vacuolar membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

KEGG gene cross-reference

ath:AT1G62200

ath:AT2G02040

ath:AT3G54140

ath:AT5G01180

ath:AT5G13400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.661

Rank 1 · TkA03G618060 · TK1151

Lysosome / Vacuole0.126

Rank 2 · TkA03G618060 · TK1151

Endoplasmic reticulum0.088

Rank 3 · TkA03G618060 · TK1151

Cytoplasm0.087

Rank 4 · TkA03G618060 · TK1151

Mitochondrion0.047

Rank 5 · TkA03G618060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690MFS_175-226 aa

PF14023Bestrophin-like90-112 aa

PF07690MFS_194-561 aa

PF05052MerE128-163 aa

PF00854PTR2143-573 aa

PF14023Bestrophin-like224-283 aa

PF20556DUF6768243-281 aa

PF05052MerE508-530 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G618060	`PF07690`	MFS_1	75	226	3.9e-10	39.9
TkA03G618060	`PF14023`	Bestrophin-like	90	112	2.9	8.1
TkA03G618060	`PF07690`	MFS_1	94	561	3.9e-10	39.9
TkA03G618060	`PF05052`	MerE	128	163	9.8	6.9
TkA03G618060	`PF00854`	PTR2	143	573	1e-76	259.1
TkA03G618060	`PF14023`	Bestrophin-like	224	283	2.9	8.1
TkA03G618060	`PF20556`	DUF6768	243	281	3.5	8.1
TkA03G618060	`PF05052`	MerE	508	530	9.8	6.9
TkA03G618060	`PF14023`	Bestrophin-like	562	617	2.9	8.1
TkA03G618060	`PF07690`	MFS_1	583	617	3.9e-10	39.9
TkA03G618060	`PF20556`	DUF6768	587	614	3.5	8.1
TkA03G618060	`PF00854`	PTR2	591	619	1e-76	259.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LYR6`	Arabidopsis thaliana	sp\|Q9LYR6\|PTR49_ARATH Protein NRT1/ PTR FAMILY 6.1	75.800%	Swiss-Prot	High
`Q9M390`	Arabidopsis thaliana	sp\|Q9M390\|PTR1_ARATH Protein NRT1/ PTR FAMILY 8.1	39.500%	Swiss-Prot	Medium
`P46032`	Arabidopsis thaliana	sp\|P46032\|PTR2_ARATH Protein NRT1/ PTR FAMILY 8.3	39.900%	Swiss-Prot	Medium
`Q93Z20`	Arabidopsis thaliana	sp\|Q93Z20\|PTR17_ARATH Protein NRT1/ PTR FAMILY 8.5	39.300%	Swiss-Prot	Medium
`Q9LFB8`	Arabidopsis thaliana	sp\|Q9LFB8\|PTR5_ARATH Protein NRT1/ PTR FAMILY 8.2	39.500%	Swiss-Prot	Medium

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