RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G608890
Reference: TK1151 Chr: Chr03 Coordinates: 154615869-154617886 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1323 bp · TkA03G608890|TK1151|cDNA

TAGAAGCTGACAAAAGATACTACGATAAGAAAGAGAAGAAGCAAAGGAAGATCAAAGGCATCCCTTTCTTTTCTTTGCAAAGATTATACCTTTAAGCAAACAAACAAACAAACAAACCCCTTTCTCTCTCTCTCTCTCTCTAAACCCCAAATTTCAGCCATTAAAACCCCTCTTTCCATGCTCCTCTCCTCCTCTTATTTCTCTAGAGAATCTGCTTCAGAACACAAAAGCGTTTCAGAATTGATGTATCATAAACAATC...

CDS

Download CDS FASTA

792 bp · TkA03G608890|TK1151|CDS

ATGCTCCTCTCCTCCTCTTATTTCTCTAGAGAATCTGCTTCAGAACACAAAAGCGTTTCAGAATTGATGTATCATAAACAATCCCACAGCAACAGTTCTCTTTTCAGAGAATCCATTACAACCCTCGAAGCTCATATCCATCATGCCAATGCCCTAGCAGCTGCTCTGCCTCCAGATGATGAAGGTGATTCCGTTCGAATGAAATTATCGTACGGCACTTTTGCGCCATTTTTGCTCTATTTGATTGACTGGATGGACTG...

Protein

Download Protein FASTA

263 aa · TkA03G608890|TK1151|PROTEIN

MLLSSSYFSRESASEHKSVSELMYHKQSHSNSSLFRESITTLEAHIHHANALAAALPPDDEGDSVRMKLSYGTFAPFLLYLIDWMDCSCTDSLPSYLGLLHILVYKVYVDGIQTMSSQERKATLREFYAVIYPSLKQLEDYLIELRDDNDDDDDDKINCKNVDREDECGICMETCDKMALPNCGHSMCIGCYRDWNMRSKSCPFCRGSLKKVHSGDLWVLTNENDSVDLMTLAKENLRCFYLYIESLPFIVPDTHFLLYE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G608890
TK1151 IDTkA03G608890
OH-1004 IDLXL04_020711
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)48.100
Protein coverage (%)TK1151 92.395 / OH-1004 99.608
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G608890
LocationChr03:154615869-154617886 (+)
DescriptionSimilar to AIRP2: E3 ubiquitin-protein ligase AIRP2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g01520 Possesses E3 ubiquitin-protein ligase activity in vitro when associated with the E2 enzyme UBC8 in vitro.
The Arabidopsis RING E3 ubiquitin ligase AtAIRP2 plays combinatory roles with AtAIRP1 in abscisic acid-mediated drought stress responses.2011 · DOI: 10.1104/pp.111.185595
AtAIRP2 E3 Ligase Affects ABA and High-Salinity Responses by Stimulating Its ATP1/SDIRIP1 Substrate Turnover.2017 · DOI: 10.1104/pp.17.00467

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020711 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006302 double-strand break repair Biological Process
GO:0006303 double-strand break repair via nonhomologous end joining Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0006974 DNA damage response Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0010212 response to ionizing radiation Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0034244 negative regulation of transcription elongation by RNA polymerase II Biological Process
GO:0035092 sperm DNA condensation Biological Process
GO:0040029 epigenetic regulation of gene expression Biological Process
KEGG gene cross-reference
ath:AT5G01520
bta:515933
dre:564271
gga:423039
xla:380076
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.432
Rank 1 · TkA03G608890 · TK1151
Cytoplasm0.377
Rank 2 · TkA03G608890 · TK1151
Cell membrane0.141
Rank 3 · TkA03G608890 · TK1151
Endoplasmic reticulum0.126
Rank 4 · TkA03G608890 · TK1151
Lysosome / Vacuole0.082
Rank 5 · TkA03G608890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25806RHH_ERCC6L2112-154 aa
PF25447RING_ZNF598164-212 aa
PF13920zf-C3HC4_3165-211 aa
PF12678zf-rbx1165-206 aa
PF13639zf-RING_2166-206 aa
PF14634zf-RING_5167-206 aa
PF13923zf-C3HC4_2167-205 aa
PF05290Baculo_IE-1167-212 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G608890PF25806RHH_ERCC6L21121540.005317.7
TkA03G608890PF25447RING_ZNF5981642120.005217.8
TkA03G608890PF13920zf-C3HC4_31652117.9e-0935.9
TkA03G608890PF12678zf-rbx11652060.8810.6
TkA03G608890PF13639zf-RING_21662064.3e-0834.0
TkA03G608890PF14634zf-RING_51672068.9e-0523.1
TkA03G608890PF13923zf-C3HC4_21672050.0005820.3
TkA03G608890PF05290Baculo_IE-11672120.4711.1
TkA03G608890PF12798Fer4_31671774.19.2
TkA03G608890PF00097zf-C3HC41682051e-0526.0
TkA03G608890PF24921RING_XB3-XBAT311682092.2e-0525.1
TkA03G608890PF13445zf-RING_UBOX1682030.0006120.5
TkA03G608890PF14447Prok-RING_41682080.001818.8
TkA03G608890PF15227zf-C3HC4_41682050.511.2
TkA03G608890PF14570zf-RING_41702070.05713.9
TkA03G608890PF22191IBR_11752000.1113.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M022Arabidopsis thalianasp|Q9M022|AIRP2_ARATH E3 ubiquitin-protein ligase AIRP244.300%Swiss-ProtMedium

JBrowse

View in Genome Browser