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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G606970
Reference: TK1151 Chr: Chr03 Coordinates: 154160659-154163195 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1930 bp · TkA03G606970|TK1151|cDNA

GCCTTCTCTAACATTTTCTGTCTTCTCAGTTCTCTTCAAGGTTGTAGAATTATAAACCCTAACTTATAAGCCTTAAACCCTTAACAGCAACCTCCGCTTCTTCTTCAAGGATCCGAGGTTCTGTTCTTATTCATCTAACCATTAATCATGATGAAAGGTAAAAAGTTCAATAACAATAACAAGAGTCAAAATGGGCACAGAAGCAAACGGTTTAAATCCGACAAGCCAGACCCGTTCTTCGACGGCGATTCAAAACACCG...

CDS

Download CDS FASTA

1539 bp · TkA03G606970|TK1151|CDS

ATGATGAAAGGTAAAAAGTTCAATAACAATAACAAGAGTCAAAATGGGCACAGAAGCAAACGGTTTAAATCCGACAAGCCAGACCCGTTCTTCGACGGCGATTCAAAACACCGAAAGAAATTTGCAAATCGAGACAATGATGAGGACAGCATTAAGAGCAGTGATTCTGAAGATTATGACGACAGAGATGTGGCGGCGGCGGTGGAGGATGACGGCGAGGAAAATGAATTGGTTGAAGAGGACGCAGGTGAGAAACGGAA...

Protein

Download Protein FASTA

512 aa · TkA03G606970|TK1151|PROTEIN

MMKGKKFNNNNKSQNGHRSKRFKSDKPDPFFDGDSKHRKKFANRDNDEDSIKSSDSEDYDDRDVAAAVEDDGEENELVEEDAGEKRKRVAEAYVEKIRAGLRKQEEEGDDEVDERGGKEGGDRDSLVARMLQAQQLEDSGRVRKLIASRVQKPTTADGFKVLVKHRQSVTSVVLSEDDSKGFSASKDGYIVQWDVESGKAEAYTWPSEEVLKSHGAKEPQGRAKKRSKHVLALAVSSDGRYLASGGFDRHVHLWDTRTRE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G606970
TK1151 IDTkA03G606970
OH-1004 IDLXL04_011629
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 99.805
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G606970
LocationChr03:154160659-154163195 (-)
DescriptionSimilar to YAO: U3 snoRNP-associated protein-like YAO
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g21130 Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). No verified direct reference in this release
At4g05410 Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0625900 Component of a nucleolar small nuclear ribonucleoprotein particle (snoRNP) thought to participate in the processing and modification of pre-ribosomal RNA (By similarity). No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011629 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006364 rRNA processing Biological Process
GO:0009553 embryo sac development Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0030490 maturation of SSU-rRNA Biological Process
GO:0042274 ribosomal small subunit biogenesis Biological Process
GO:0060321 acceptance of pollen Biological Process
GO:0005634 nucleus Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005730 nucleolus Cellular Component
GO:0031428 box C/D methylation guide snoRNP complex Cellular Component
GO:0032040 small-subunit processome Cellular Component
GO:0080008 Cul4-RING E3 ubiquitin ligase complex Cellular Component
KEGG gene cross-reference
ath:AT4G05410
ath:AT4G21130
dosa:Os03g0625900
hsa:9136
mmu:27966
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.955
Rank 1 · TkA03G606970 · TK1151
Cytoplasm0.103
Rank 2 · TkA03G606970 · TK1151
Mitochondrion0.018
Rank 3 · TkA03G606970 · TK1151
Cell membrane0.017
Rank 4 · TkA03G606970 · TK1151
Endoplasmic reticulum0.008
Rank 5 · TkA03G606970 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04147Nop142-167 aa
PF29788TP_0598_N87-222 aa
PF25178Beta-prop_WDR41142-199 aa
PF23869Beta-prop_WDR75_1st150-196 aa
PF24105Beta-prop_CAF1B_HIR1151-202 aa
PF26586Fn3_R-PTP-O151-184 aa
PF23414Beta-prop_EML_2153-195 aa
PF23798Beta-prop_SPT8153-200 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G606970PF04147Nop1421670.579.1
TkA03G606970PF29788TP_0598_N872220.949.2
TkA03G606970PF25178Beta-prop_WDR411421992.4e-1040.5
TkA03G606970PF23869Beta-prop_WDR75_1st1501962.9e-1040.7
TkA03G606970PF24105Beta-prop_CAF1B_HIR11512021.4e-1144.7
TkA03G606970PF26586Fn3_R-PTP-O1511840.1413.1
TkA03G606970PF23414Beta-prop_EML_21531959.3e-2071.8
TkA03G606970PF23798Beta-prop_SPT81532002.4e-0730.7
TkA03G606970PF25175Beta-prop_WDR51552003.7e-36125.6
TkA03G606970PF24805EIF3I1552001.6e-1661.1
TkA03G606970PF23381Beta-prop_IFT122_1st1562001.5e-32113.8
TkA03G606970PF25172Beta-prop_WDR3_2nd1571961.5e-2177.6
TkA03G606970PF24817WD40_WDHD1_1st1582012.2e-2383.6
TkA03G606970PF24807WD40_CDC20-Fz1581982.2e-2383.7
TkA03G606970PF25047Beta-prop_TEP1_2nd1591984.1e-2692.4
TkA03G606970PF23414Beta-prop_EML_21591959.3e-2071.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3MKM6Arabidopsis thalianasp|Q3MKM6|YAOL_ARATH U3 snoRNP-associated protein-like EMB227153.000%Swiss-ProtHigh
Q9M0V4Arabidopsis thalianasp|Q9M0V4|YAO_ARATH U3 snoRNP-associated protein-like YAO64.600%Swiss-ProtHigh
Q75LV5Oryza sativa subsp. japonicasp|Q75LV5|YAO_ORYSJ U3 snoRNP-associated protein-like YAOH64.700%Swiss-ProtHigh

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