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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G586870
Reference: TK1151 Chr: Chr03 Coordinates: 149132392-149132886 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

495 bp · TkA03G586870|TK1151|cDNA

ATGGGTTTCTATATGGGTTTCAGAGAAACGGGGATGTCCAAATACATTCTATACATATTTTCTCTTCTATGTTCTATTCAAAATATCATTCTATCTGTACTTCACTTGATCCGTATCACTCATGTAGTCGAATCCCACCATCCCAATCATAAGAAACCATCCAAAAACCCGCCCCTTTCAGCAGTGCTGACACGTGAATTTCTTGCGGTCACAAACTTTGTGGACATTCAGAAGAAAGATTTAGCTACCAGTTGTGCAGT...

CDS

Download CDS FASTA

495 bp · TkA03G586870|TK1151|CDS

ATGGGTTTCTATATGGGTTTCAGAGAAACGGGGATGTCCAAATACATTCTATACATATTTTCTCTTCTATGTTCTATTCAAAATATCATTCTATCTGTACTTCACTTGATCCGTATCACTCATGTAGTCGAATCCCACCATCCCAATCATAAGAAACCATCCAAAAACCCGCCCCTTTCAGCAGTGCTGACACGTGAATTTCTTGCGGTCACAAACTTTGTGGACATTCAGAAGAAAGATTTAGCTACCAGTTGTGCAGT...

Protein

Download Protein FASTA

164 aa · TkA03G586870|TK1151|PROTEIN

MGFYMGFRETGMSKYILYIFSLLCSIQNIILSVLHLIRITHVVESHHPNHKKPSKNPPLSAVLTREFLAVTNFVDIQKKDLATSCAVCLNDFVEDDKIRCLKNCTHIFHECCLDSWMNQVKDTCPICRSPILPVECQDEYIKRLRDVATDLHDFHDEVLLIHEL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G586870
TK1151 IDTkA03G586870
OH-1004 IDLXL04_011424
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.300
Protein coverage (%)TK1151 93.293 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G586870
LocationChr03:149132392-149132886 (+)
DescriptionSimilar to BRH1: Brassinosteroid-responsive RING protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g61460 May be involved in the brassinosteroids (BRs) signaling pathway and regulate the growth and development of rosette leaves.
Characterisation of BRH1, a brassinosteroid-responsive RING-H2 gene from Arabidopsis thaliana.2002 · DOI: 10.1007/s00425-001-0723-z
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.2018 · DOI: 10.1007/s11427-017-9133-8
At1g72200 RING-H2 finger protein ATL11. No verified direct reference in this release
At1g22500 E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, UBC28 and UBC29 in vitro. No verified direct reference in this release
At4g09100 RING-H2 finger protein ATL39. No verified direct reference in this release
At1g04360 RING-H2 finger protein ATL1. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011424 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000209 protein polyubiquitination Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009741 response to brassinosteroid Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0010200 response to chitin Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0031669 cellular response to nutrient levels Biological Process
GO:0032418 lysosome localization Biological Process
GO:0034198 cellular response to amino acid starvation Biological Process
GO:0035519 protein K29-linked ubiquitination Biological Process
GO:0045786 negative regulation of cell cycle Biological Process
GO:0051640 organelle localization Biological Process
KEGG gene cross-reference
ath:AT3G61460
ath:AT4G11360
ath:AT4G11370
hsa:26001
mmu:70510
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.286
Rank 1 · TkA03G586870 · TK1151
Cytoplasm0.269
Rank 2 · TkA03G586870 · TK1151
Lysosome / Vacuole0.234
Rank 3 · TkA03G586870 · TK1151
Cell membrane0.197
Rank 4 · TkA03G586870 · TK1151
Nucleus0.180
Rank 5 · TkA03G586870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14369Zn_ribbon_1972-94 aa
PF17120zf-RING_1682-125 aa
PF13920zf-C3HC4_383-131 aa
PF13639zf-RING_284-128 aa
PF12678zf-rbx184-128 aa
PF23555zf-RING_Vps4184-127 aa
PF17123zf-RING_1185-113 aa
PF14634zf-RING_585-128 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G586870PF14369Zn_ribbon_1972940.03415.0
TkA03G586870PF17120zf-RING_16821250.004917.2
TkA03G586870PF13920zf-C3HC4_3831310.0116.3
TkA03G586870PF13639zf-RING_2841285.1e-1143.4
TkA03G586870PF12678zf-rbx1841282.2e-0628.5
TkA03G586870PF23555zf-RING_Vps41841270.07913.3
TkA03G586870PF17123zf-RING_11851138.4e-0626.1
TkA03G586870PF14634zf-RING_5851283e-0524.6
TkA03G586870PF00097zf-C3HC4851270.0004820.6
TkA03G586870PF13923zf-C3HC4_2851270.001718.8
TkA03G586870PF13445zf-RING_UBOX851250.00218.8
TkA03G586870PF14447Prok-RING_4851310.7610.4
TkA03G586870PF23004PHDvar_NSD851281.99.2
TkA03G586870PF14570zf-RING_4851302.58.7
TkA03G586870PF12906RINGv851278.27.4
TkA03G586870PF12861zf-ANAPC11921291.9e-0525.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9XF92Arabidopsis thalianasp|Q9XF92|BRH1_ARATH Brassinosteroid-responsive RING protein 137.800%Swiss-ProtMedium
Q84W40Arabidopsis thalianasp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL1143.400%Swiss-ProtLow
Q9SK92Arabidopsis thalianasp|Q9SK92|ATL15_ARATH E3 ubiquitin-protein ligase ATL1543.400%Swiss-ProtLow
Q9M0R7Arabidopsis thalianasp|Q9M0R7|ATL39_ARATH RING-H2 finger protein ATL3929.700%Swiss-ProtLow
P93823Arabidopsis thalianasp|P93823|ATL1_ARATH RING-H2 finger protein ATL148.900%Swiss-ProtLow

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