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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G585980
Reference: TK1151 Chr: Chr03 Coordinates: 148846403-148846861 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

459 bp · TkA03G585980|TK1151|cDNA

ATGTTATTAACCGGTAACCGGTTTCTTCTTCCCAATTGCCCGATTTATGTGATTCAACCTCACAGCAAGAACCAACTCCTACTTCTTCACTTACCAGTATCTAATCGCAAACTCGTGTCATCTTTCTGGGACCTTACGCTCATCAAGCCATTAATGGATTCGGAGCTCGACGCTGCTCGTGCGCAGATCAAGGAGCTCAAATCACAGCTCGATCACGAACGAAAAGTTCGTAAAAAAGCCGAGTCCGTTAACAAGAAGCT...

CDS

Download CDS FASTA

459 bp · TkA03G585980|TK1151|CDS

ATGTTATTAACCGGTAACCGGTTTCTTCTTCCCAATTGCCCGATTTATGTGATTCAACCTCACAGCAAGAACCAACTCCTACTTCTTCACTTACCAGTATCTAATCGCAAACTCGTGTCATCTTTCTGGGACCTTACGCTCATCAAGCCATTAATGGATTCGGAGCTCGACGCTGCTCGTGCGCAGATCAAGGAGCTCAAATCACAGCTCGATCACGAACGAAAAGTTCGTAAAAAAGCCGAGTCCGTTAACAAGAAGCT...

Protein

Download Protein FASTA

152 aa · TkA03G585980|TK1151|PROTEIN

MLLTGNRFLLPNCPIYVIQPHSKNQLLLLHLPVSNRKLVSSFWDLTLIKPLMDSELDAARAQIKELKSQLDHERKVRKKAESVNKKLMKELKGRESLEKACEELSAEITYNKAELTRLKKDTEEERKMMRVAEVLREERVQMKLTDAKIMLE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G585980
TK1151 IDTkA03G585980
OH-1004 IDLXL04_011388
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G585980
LocationChr03:148846403-148846861 (-)
DescriptionSimilar to BLT: Protein BRANCHLESS TRICHOME
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g64690 Acts as a key regulator of trichome branching. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011388 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010090 trichome morphogenesis Biological Process
GO:0010091 trichome branching Biological Process
GO:0005739 mitochondrion Cellular Component
KEGG gene cross-reference
ath:AT1G64690
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.481
Rank 1 · TkA03G585980 · TK1151
Nucleus0.346
Rank 2 · TkA03G585980 · TK1151
Cell membrane0.144
Rank 3 · TkA03G585980 · TK1151
Endoplasmic reticulum0.072
Rank 4 · TkA03G585980 · TK1151
Mitochondrion0.063
Rank 5 · TkA03G585980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28743IPGAL2_N29-39 aa
PF30677CCDC18_1st34-74 aa
PF13600DUF414044-82 aa
PF08702Fib_alpha48-143 aa
PF30842LEKR151-134 aa
PF14362DUF440752-131 aa
PF05615THOC752-85 aa
PF09036Bcr-Abl_Oligo52-74 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G585980PF28743IPGAL2_N29397.47.1
TkA03G585980PF30677CCDC18_1st34740.02414.6
TkA03G585980PF13600DUF414044824.78.4
TkA03G585980PF08702Fib_alpha481430.4411.5
TkA03G585980PF30842LEKR1511340.312.1
TkA03G585980PF14362DUF4407521310.003617.4
TkA03G585980PF05615THOC752850.04214.9
TkA03G585980PF09036Bcr-Abl_Oligo52740.5211.0
TkA03G585980PF04799Fzo_mitofusin52889.56.4
TkA03G585980PF07303Occludin_ELL531210.3312.5
TkA03G585980PF06810Phage_scaffold541301.29.8
TkA03G585980PF15188CCDC-167541321.79.7
TkA03G585980PF03961FapA541284.27.6
TkA03G585980PF19579FtsL_254896.27.5
TkA03G585980PF26022CC_Liprin_beta551330.003218.5
TkA03G585980PF29562DUF8567551290.005917.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4I878Arabidopsis thalianasp|F4I878|BLT_ARATH Protein BRANCHLESS TRICHOME36.000%Swiss-ProtMedium

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