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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G580670
Reference: TK1151 Chr: Chr03 Coordinates: 147331934-147335464 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1662 bp · TkA03G580670|TK1151|cDNA

TTCTGGTTTACCTGAAGTTCTTCACCACCGTCACCGAGAAGCAAAGGGATTGAGAGAAGTCTGATTGAAAAAGAAGAAAGGGGATGGGAGGTTCGAAGACGGAAGGGGCAACCTCTTCCTCAACCCCTGTAATTGCAAATCGTAGAGACCCATATGAGGTTTTGAGTGTCTCAAGAGATGCTTCTGATCAGGAGATTAAATCCGCTTACAGAAAACTTGCTCTCAAATATCATCCTGATAAAAACGCTAGTAACCCCGAA...

CDS

Download CDS FASTA

1260 bp · TkA03G580670|TK1151|CDS

ATGGGAGGTTCGAAGACGGAAGGGGCAACCTCTTCCTCAACCCCTGTAATTGCAAATCGTAGAGACCCATATGAGGTTTTGAGTGTCTCAAGAGATGCTTCTGATCAGGAGATTAAATCCGCTTACAGAAAACTTGCTCTCAAATATCATCCTGATAAAAACGCTAGTAACCCCGAAGCCTCAGAACAATTCAAGGAGGTTGCCTATTCTTACAGCATTCTATCCGATCCAGAAAAAAGAAGGCAATATGATAACGCTGG...

Protein

Download Protein FASTA

419 aa · TkA03G580670|TK1151|PROTEIN

MGGSKTEGATSSSTPVIANRRDPYEVLSVSRDASDQEIKSAYRKLALKYHPDKNASNPEASEQFKEVAYSYSILSDPEKRRQYDNAGFEAIDAEGMDMEIDLSNLGTVNTMFAALFSKLGVPIKTTISASVLEEALNGTVTVRPLPIGTSVSGKVEKQCAHFFGVTISEEQAQSGIVVRVSSAAQSKFKLLYFEQDNGGGYSLALQEDSEKTGKVTSAGMYFLHFQVYRMDSTVNAFEMAKDPEAAFFKRLEGLQPCEVS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G580670
TK1151 IDTkA03G580670
OH-1004 IDLXL04_011284
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.300
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G580670
LocationChr03:147331934-147335464 (-)
DescriptionSimilar to ATJ15: Chaperone protein dnaJ 15
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g68370 Plays a continuous role in plant development probably in the structural organization of compartments (By similarity). No verified direct reference in this release
At1g24120 Plays a continuous role in plant development probably in the structural organization of compartments (By similarity). No verified direct reference in this release
At1g59980 Plays a continuous role in plant development probably in the structural organization of compartments (By similarity). No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011284 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006260 DNA replication Biological Process
GO:0009408 response to heat Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009958 positive gravitropism Biological Process
GO:0042026 protein refolding Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005789 endoplasmic reticulum membrane Cellular Component
GO:0005856 cytoskeleton Cellular Component
GO:0016020 membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0008092 cytoskeletal protein binding Molecular Function
KEGG gene cross-reference
ath:AT1G24120
ath:AT1G59980
ath:AT1G68370
mfa:Mfla_0750
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.555
Rank 1 · TkA03G580670 · TK1151
Nucleus0.255
Rank 2 · TkA03G580670 · TK1151
Golgi apparatus0.179
Rank 3 · TkA03G580670 · TK1151
Endoplasmic reticulum0.146
Rank 4 · TkA03G580670 · TK1151
Cell membrane0.106
Rank 5 · TkA03G580670 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30912TIM141_C19-57 aa
PF00226DnaJ22-84 aa
PF07007LprI26-66 aa
PF04791LMBR134-82 aa
PF13949ALIX_LYPXL_bnd37-50 aa
PF28696Gleo_Verruco148-238 aa
PF01920Prefoldin_2258-325 aa
PF07007LprI285-336 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G580670PF30912TIM141_C19570.02615.3
TkA03G580670PF00226DnaJ22847.7e-2897.1
TkA03G580670PF07007LprI26661.410.0
TkA03G580670PF04791LMBR134820.0513.2
TkA03G580670PF13949ALIX_LYPXL_bnd37500.01615.2
TkA03G580670PF28696Gleo_Verruco1482380.02514.8
TkA03G580670PF01920Prefoldin_22583250.00717.0
TkA03G580670PF07007LprI2853361.410.0
TkA03G580670PF04791LMBR12933530.0513.2
TkA03G580670PF14523Syntaxin_22953490.02315.4
TkA03G580670PF01025GrpE2953410.989.8
TkA03G580670PF13949ALIX_LYPXL_bnd2973610.01615.2
TkA03G580670PF16533SOAR2973300.4511.2
TkA03G580670PF25101Spectrin_72993600.02415.7
TkA03G580670PF13025DUF38863003483.68.5
TkA03G580670PF00226DnaJ3223347.7e-2897.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZSY2Arabidopsis thalianasp|Q9ZSY2|DNJ15_ARATH Chaperone protein dnaJ 1577.600%Swiss-ProtHigh
Q8VXV4Arabidopsis thalianasp|Q8VXV4|DNJ16_ARATH Chaperone protein dnaJ 1665.300%Swiss-ProtHigh
Q6XL73Arabidopsis thalianasp|Q6XL73|DNJ39_ARATH Chaperone protein dnaJ 3955.600%Swiss-ProtHigh

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