TkA03G560000 | RubberDandelionOmics

Gene overview

TkA03G560000

Reference: TK1151 Chr: Chr03 Coordinates: 142009018-142009707 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

690 bp · TkA03G560000|TK1151|cDNA

ATGCAGAAGAGTCACATTAGTACTACCACCATTAGGGTTCTTGAGGCTGCACCCTCTCCATCTCCGCCACCCACAACCACCGCCAATGGTGGAGGAGGAGGAGTTCCAGCATGTGCTTCATGCCGCCACCAGCGAAAGAAGTGCACAGAAAAGTGTATCTTGGCACCGTTTTTTCCAGCGGAAAAAACCCAGGATTTTCAGGCGGTTCATAAGGTTTTCGGGGTTAGTAATGTGACGAAATTGGTCAAGGATTTGACCAG...

CDS

Download CDS FASTA

690 bp · TkA03G560000|TK1151|CDS

ATGCAGAAGAGTCACATTAGTACTACCACCATTAGGGTTCTTGAGGCTGCACCCTCTCCATCTCCGCCACCCACAACCACCGCCAATGGTGGAGGAGGAGGAGTTCCAGCATGTGCTTCATGCCGCCACCAGCGAAAGAAGTGCACAGAAAAGTGTATCTTGGCACCGTTTTTTCCAGCGGAAAAAACCCAGGATTTTCAGGCGGTTCATAAGGTTTTCGGGGTTAGTAATGTGACGAAATTGGTCAAGGATTTGACCAG...

Protein

Download Protein FASTA

229 aa · TkA03G560000|TK1151|PROTEIN

MQKSHISTTTIRVLEAAPSPSPPPTTTANGGGGGVPACASCRHQRKKCTEKCILAPFFPAEKTQDFQAVHKVFGVSNVTKLVKDLTREDGKKAVDSLIWEANCRLKDPVLGPLGEFQRVSEELRVYKTQYQQANIHHHLRQVPITQNGVLYNNKSGQQRLIGSWNGDNNGAMLDYIHSNGIGNGGGIDNSRMFNYGSLQNMEKLKQERDQQGSLIHPQQHMMNDYSQFY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G560000`
TK1151 ID	TkA03G560000
OH-1004 ID	LXL04_011000
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G560000

Location Chr03:142009018-142009707 (+)

Description Similar to LBD2: LOB domain-containing protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g06280`	LOB domain-containing protein 2.	No verified direct reference in this release
`At1g16530`	LOB domain-containing protein 3.	No verified direct reference in this release
`At5g66870`	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves.	Activation tagging, a novel tool to dissect the functions of a gene family.2003 · DOI: 10.1046/j.1365-313x.2003.01758.x ASYMMETRIC LEAVES2-LIKE1 gene, a member of the AS2/LOB family, controls proximal-distal patterning in Arabidopsis petals.2005 · DOI: 10.1007/s11103-005-0698-4
`At1g65620`	Negative regulator of cell proliferation in the adaxial side of leaves.	No verified direct reference in this release
`At1g31320`	LOB domain-containing protein 4.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011000 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009736 cytokinin-activated signaling pathway Biological Process

GO:0009954 proximal/distal pattern formation Biological Process

GO:0009965 leaf morphogenesis Biological Process

GO:0010016 shoot system morphogenesis Biological Process

GO:0010199 organ boundary specification between lateral organs and the meristem Biological Process

GO:0048364 root development Biological Process

GO:0048441 petal development Biological Process

GO:0080117 secondary growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0001216 DNA-binding transcription activator activity Molecular Function

KEGG gene cross-reference

ath:AT1G06280

ath:AT1G16530

ath:AT2G30130

ath:AT5G63090

ath:AT5G66870

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.982

Rank 1 · TkA03G560000 · TK1151

Cytoplasm0.065

Rank 2 · TkA03G560000 · TK1151

Cell membrane0.020

Rank 3 · TkA03G560000 · TK1151

Endoplasmic reticulum0.014

Rank 4 · TkA03G560000 · TK1151

Plastid0.009

Rank 5 · TkA03G560000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03195LOB37-133 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G560000	`PF03195`	LOB	37	133	1e-33	116.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LNB9`	Arabidopsis thaliana	sp\|Q9LNB9\|LBD2_ARATH LOB domain-containing protein 2	43.400%	Swiss-Prot	Medium
`Q9SA51`	Arabidopsis thaliana	sp\|Q9SA51\|LBD3_ARATH LOB domain-containing protein 3	37.000%	Swiss-Prot	Medium
`Q9FKZ3`	Arabidopsis thaliana	sp\|Q9FKZ3\|LBD36_ARATH LOB domain-containing protein 36	46.000%	Swiss-Prot	Low
`O04479`	Arabidopsis thaliana	sp\|O04479\|AS2_ARATH Protein ASYMMETRIC LEAVES 2	47.100%	Swiss-Prot	Low
`Q9SHE9`	Arabidopsis thaliana	sp\|Q9SHE9\|LBD4_ARATH LOB domain-containing protein 4	39.100%	Swiss-Prot	Low

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