RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G557380
Reference: TK1151 Chr: Chr03 Coordinates: 141067277-141070921 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2590 bp · TkA03G557380|TK1151|cDNA

TTCGTAGGGGCCCGAAACATCAGTGAATGACTCGATCAACACAAGTTTAATCATCCCTCTTTCTCCCTCTTCAATCCCACACAATACTGCTCGCTTGAAAATTTTCAACAATTTCCACGTACATACCCAAGTAACACTCCAATCACACCACCCGAATGTTCCCCGAATCGATTTGCATGTATCATCAGTTGGAGGGAAAACGAGGTCGATTGATTCGTTGAATCGAAGCGGTTTTTCGTAAATCGCTGATGGAAAGGGAA...

CDS

Download CDS FASTA

1302 bp · TkA03G557380|TK1151|CDS

ATGGAAAGGGAACCGCTTCTTCCATCCCATTCGAAATACATAAACACACCGTCGCAGCTCCGCCAATTAGCGATAGAAAATGAATACGCCATTCCCCCATCTCTTACTCCGTCGGAGTTCAAAGATATGCTCATATTTGGCTCCCCAAGAGGCGAACCATCTTCGCAAACGGTTGATGCCCTAAATCTACACCTGAATACTGATACCTCCAGTGATTCCCCAAAACTCTTTCCTTCCAGTTCCAATTCCAATATTTCCAA...

Protein

Download Protein FASTA

433 aa · TkA03G557380|TK1151|PROTEIN

MEREPLLPSHSKYINTPSQLRQLAIENEYAIPPSLTPSEFKDMLIFGSPRGEPSSQTVDALNLHLNTDTSSDSPKLFPSSSNSNISNPIPVVINPDLQIQITPSRPPDVIYPIKKYLHRSKTAPAICNINELGQNTKNNPPQLASPSIVRQSVVLLIVYLLCGVFIYWYNRKHFIGKETYVVVDALYFCIVTMCTIGYGDILPNSPVTKMFSIMFVLVGFGFIDILLSGMVSYVLDIQENYLLRSLSNGKRRDHPSYMID...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G557380
TK1151 IDTkA03G557380
OH-1004 IDLXL04_010947
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G557380
LocationChr03:141067277-141070921 (-)
DescriptionSimilar to TPK3: Two-pore potassium channel 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g18160 Two-pore potassium channel modulating the proton motive force (pmf) necessary to convert photochemical energy into physiological functions. No verified direct reference in this release
At5g46370 Probable voltage-independent potassium-selective tonoplast ion channel. No verified direct reference in this release
At4g01840 Probable voltage-independent potassium-selective tonoplast ion channel. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os09g0299400 Inward-rectifying potassium channel. No verified direct reference in this release
Os03g0752300 Highly selective inward-rectifying potassium channel that is specifically located in the tonoplast of large vacuoles.
Rice two-pore K+ channels are expressed in different types of vacuoles.2011 · DOI: 10.1105/tpc.110.081463
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010947 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010027 thylakoid membrane organization Biological Process
GO:0010196 nonphotochemical quenching Biological Process
GO:0071257 cellular response to electrical stimulus Biological Process
GO:0071805 potassium ion transmembrane transport Biological Process
GO:0097623 potassium ion export across plasma membrane Biological Process
GO:1990573 potassium ion import across plasma membrane Biological Process
GO:0005634 nucleus Cellular Component
GO:0005773 vacuole Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009533 chloroplast stromal thylakoid Cellular Component
GO:0009705 plant-type vacuole membrane Cellular Component
KEGG gene cross-reference
ath:AT1G02510
ath:AT4G01840
ath:AT4G18160
ath:AT5G46370
dosa:Os09g0299400
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.376
Rank 1 · TkA03G557380 · TK1151
Cell membrane0.290
Rank 2 · TkA03G557380 · TK1151
Cytoplasm0.134
Rank 3 · TkA03G557380 · TK1151
Endoplasmic reticulum0.127
Rank 4 · TkA03G557380 · TK1151
Golgi apparatus0.113
Rank 5 · TkA03G557380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13405EF-hand_635-44 aa
PF00036EF-hand_135-44 aa
PF13202EF-hand_535-43 aa
PF00520Ion_trans153-235 aa
PF07885Ion_trans_2155-234 aa
PF07885Ion_trans_2279-348 aa
PF00520Ion_trans299-337 aa
PF05412Peptidase_C33328-392 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G557380PF13405EF-hand_635441.6e-0525.0
TkA03G557380PF00036EF-hand_135441.9e-0524.6
TkA03G557380PF13202EF-hand_535430.000320.9
TkA03G557380PF00520Ion_trans1532352.6e-0524.3
TkA03G557380PF07885Ion_trans_21552341.2e-2693.0
TkA03G557380PF07885Ion_trans_22793481.2e-2693.0
TkA03G557380PF00520Ion_trans2993372.6e-0524.3
TkA03G557380PF05412Peptidase_C333283920.01216.4
TkA03G557380PF13202EF-hand_53703880.000320.9
TkA03G557380PF13405EF-hand_63723871.6e-0525.0
TkA03G557380PF00036EF-hand_13723891.9e-0524.6
TkA03G557380PF13499EF-hand_73724282.7e-0525.1
TkA03G557380PF13833EF-hand_83723890.003117.9
TkA03G557380PF00036EF-hand_14064281.9e-0524.6
TkA03G557380PF13833EF-hand_84064280.003117.9
TkA03G557380PF13405EF-hand_64074291.6e-0525.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SVV6Arabidopsis thalianasp|Q9SVV6|KCO6_ARATH Two-pore potassium channel 358.900%Swiss-ProtHigh
Q9FL25Arabidopsis thalianasp|Q9FL25|KCO2_ARATH Two-pore potassium channel 252.400%Swiss-ProtHigh
Q9S6Z8Arabidopsis thalianasp|Q9S6Z8|KCO5_ARATH Two-pore potassium channel 553.200%Swiss-ProtHigh
Q69TN4Oryza sativa subsp. japonicasp|Q69TN4|KCO3_ORYSJ Two pore potassium channel c58.500%Swiss-ProtHigh
Q850M0Oryza sativa subsp. japonicasp|Q850M0|KCO1_ORYSJ Two pore potassium channel a35.800%Swiss-ProtMedium

JBrowse

View in Genome Browser