RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G555780
Reference: TK1151 Chr: Chr03 Coordinates: 140698201-140702168 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3340 bp · TkA03G555780|TK1151|cDNA

CGGGAGGGGAGGTGTGGTAATGAAAAATGGAACTCTTTTTGGAAAATACTACACAAATAAGACAATATGTATAAGCCGTTCTAAGCATCCTATAAAATCAAACTGGCGATGATTGCAAGTCCGCAATCATGGTTCGAGTCCACTCCATCGTTGGTTGTTACCAACCACGATTTAAATAATCCCGGCCACCTACGGCATCAGCCGCCGTCCCCTCCAATTCCATACGCCACTTCGAAGTTTTTGTTGTTTCTTGTTTGTCT...

CDS

Download CDS FASTA

2523 bp · TkA03G555780|TK1151|CDS

ATGGAGGGTTCAAATCATTCTGTTATCGCTTCTGATTCCGACGAAACAACAAACAGTGTATCAAAAGATTCCGAAACTCTCTCAGATTTCACTCACTCCACACGTAAATTAGGTGTAATTCTCACTGAATTTAAAGAAAACAAAATCATGGAGACTTCTCCCATAAGAAAAGCCGTCGATTCTCTCGAAACAGAGTTACAAAGGGCTAAAGCTTTAGTCGCAAGTCCCCTTTATTCCTCTTCACCAAAAAACCGAATCGA...

Protein

Download Protein FASTA

840 aa · TkA03G555780|TK1151|PROTEIN

MEGSNHSVIASDSDETTNSVSKDSETLSDFTHSTRKLGVILTEFKENKIMETSPIRKAVDSLETELQRAKALVASPLYSSSPKNRIEDITENLGRSIGLVLFASHDVSLTGKEKLETLRREMMSVAQFSAASSDSKSDFLDDVYTEQNDEDHDLDDDDDDDEEIVVEEIIEEDISKDVVISCSTIEDVVLYLKCGDDEQLKVALFAFETLINDHKATAEWIDSEGIVPILFNRLTSAKPLNRLSIIQNLRSLIAQDDGIK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G555780
TK1151 IDTkA03G555780
OH-1004 IDLXL04_010928
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.700
Protein coverage (%)TK1151 100.000 / OH-1004 88.377
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G555780
LocationChr03:140698201-140702168 (-)
DescriptionSimilar to PUB44: U-box domain-containing protein 44
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g76390 Functions as an E3 ubiquitin ligase. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010928 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006970 response to osmotic stress Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0010115 regulation of abscisic acid biosynthetic process Biological Process
GO:0010150 leaf senescence Biological Process
GO:0010271 regulation of chlorophyll catabolic process Biological Process
GO:0010380 regulation of chlorophyll biosynthetic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0034614 cellular response to reactive oxygen species Biological Process
GO:0048364 root development Biological Process
GO:0048658 anther wall tapetum development Biological Process
GO:0090359 negative regulation of abscisic acid biosynthetic process Biological Process
GO:1904821 chloroplast disassembly Biological Process
KEGG gene cross-reference
ath:AT1G20780
ath:AT1G76390
ath:AT2G23140
dosa:Os03g0657100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.485
Rank 1 · TkA03G555780 · TK1151
Nucleus0.401
Rank 2 · TkA03G555780 · TK1151
Cell membrane0.189
Rank 3 · TkA03G555780 · TK1151
Endoplasmic reticulum0.052
Rank 4 · TkA03G555780 · TK1151
Golgi apparatus0.037
Rank 5 · TkA03G555780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04889Cwf_Cwc_1589-165 aa
PF06524NOA36121-163 aa
PF25571TPR_CCP1_N172-238 aa
PF24768ARM_ARMC5215-366 aa
PF00514Arm221-236 aa
PF23227HEAT_MROH2B_C230-314 aa
PF23654ARM_LIN_2nd261-279 aa
PF13877RPAP3_C265-297 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G555780PF04889Cwf_Cwc_15891651.59.3
TkA03G555780PF06524NOA361211637.26.6
TkA03G555780PF25571TPR_CCP1_N1722380.001218.7
TkA03G555780PF24768ARM_ARMC52153663.6e-1866.7
TkA03G555780PF00514Arm2212361e-1454.7
TkA03G555780PF23227HEAT_MROH2B_C2303140.01515.3
TkA03G555780PF23654ARM_LIN_2nd2612792.78.3
TkA03G555780PF13877RPAP3_C2652971.79.9
TkA03G555780PF25598ARM_PUB2664621.9e-1144.7
TkA03G555780PF13513HEAT_EZ2802910.01816.3
TkA03G555780PF00514Arm2832941e-1454.7
TkA03G555780PF25571TPR_CCP1_N3303710.001218.7
TkA03G555780PF00514Arm3383721e-1454.7
TkA03G555780PF24768ARM_ARMC53775033.6e-1866.7
TkA03G555780PF25571TPR_CCP1_N3834640.001218.7
TkA03G555780PF00514Arm3864181e-1454.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SFX2Arabidopsis thalianasp|Q9SFX2|PUB43_ARATH U-box domain-containing protein 4323.400%Swiss-ProtLow

JBrowse

View in Genome Browser