TkA03G554680 | RubberDandelionOmics

Gene overview

TkA03G554680

Reference: TK1151 Chr: Chr03 Coordinates: 140438258-140440347 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1352 bp · TkA03G554680|TK1151|cDNA

TTGACTCCATTCGCTTGGACTATTGCTCATACATTAACCTATCAAATTGATCCTGCTATATATAAAACGACAACGCATTACCCAATACCCATTTACCTACCATTCTCCTGCTTCTTCTCCACTTGTCCAATTTCTTGGTTTTCAGAGACATGAGCGGAGAAGGGAAGGTAGTTTGCGTTACAGGTGCTTCAGGTTACATAGCTTCGTGGATCGTAAAGCTCTTACTTGACCGCGGCTACACTGTCCATGCTACTGTCCGC...

CDS

Download CDS FASTA

981 bp · TkA03G554680|TK1151|CDS

ATGAGCGGAGAAGGGAAGGTAGTTTGCGTTACAGGTGCTTCAGGTTACATAGCTTCGTGGATCGTAAAGCTCTTACTTGACCGCGGCTACACTGTCCATGCTACTGTCCGCTCCCTCGATGATCCAAAGAAGACGGAACACCTACGTGCTCTTGATGGAGCTAAAGAAAGATTGTCTTTGTTTGAAGCTAACTTGACTGAAGAAGGATCTTTCGATTCTGCAGTTAATGGCTGCGAATGTGTCTTCCATACAGCATCCCC...

Protein

Download Protein FASTA

326 aa · TkA03G554680|TK1151|PROTEIN

MSGEGKVVCVTGASGYIASWIVKLLLDRGYTVHATVRSLDDPKKTEHLRALDGAKERLSLFEANLTEEGSFDSAVNGCECVFHTASPVLLSVSNPQEQLLEPAVKGTLNVLKSAAKVPSLKKVVLTSSMAAVMVTAKPLEFGDVMDETWFSDPATCEQKNNWYALSKTLAEDAAVKFCKENDLNLVAINPGYVIGPILQPTLNLTSQGIMDMFETGKEVLADGIYRLVDVRDVATAHILAFENPNANGRYCVVGVVTRSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G554680`
TK1151 ID	TkA03G554680
OH-1004 ID	LXL04_010892
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	77.100
Protein coverage (%)	TK1151 96.319 / OH-1004 52.073 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G554680

Location Chr03:140438258-140440347 (-)

Description Similar to TKPR1: Tetraketide alpha-pyrone reductase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g35420`	Involved in the biosynthesis of hydroxylated tetraketide compounds that serve as sporopollenin precursors (the main constituents of exine).	An anther-specific dihydroflavonol 4-reductase-like gene (DRL1) is essential for male fertility in Arabidopsis.2009 · DOI: 10.1111/j.1469-8137.2008.02692.x Analysis of TETRAKETIDE α-PYRONE REDUCTASE function in Arabidopsis thaliana reveals a previously unknown, but conserved, biochemical pathway in sporopollenin monomer biosynthesis.2010 · DOI: 10.1105/tpc.110.080036

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010892 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007623 circadian rhythm Biological Process

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0010597 green leaf volatile biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0000166 nucleotide binding Molecular Function

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor Molecular Function

GO:0016621 cinnamoyl-CoA reductase activity Molecular Function

KEGG gene cross-reference

mtr:11427940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.823

Rank 1 · TkA03G554680 · TK1151

Nucleus0.270

Rank 2 · TkA03G554680 · TK1151

Endoplasmic reticulum0.070

Rank 3 · TkA03G554680 · TK1151

Cell membrane0.053

Rank 4 · TkA03G554680 · TK1151

Mitochondrion0.051

Rank 5 · TkA03G554680 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05368NmrA6-86 aa

PF00106adh_short6-78 aa

PF01370Epimerase8-248 aa

PF08659KR8-136 aa

PF02719Polysacc_synt_28-133 aa

PF010733Beta_HSD10-243 aa

PF07993NAD_binding_410-217 aa

PF16363GDP_Man_Dehyd10-196 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G554680	`PF05368`	NmrA	6	86	6.1e-09	36.6
TkA03G554680	`PF00106`	adh_short	6	78	0.00044	20.5
TkA03G554680	`PF01370`	Epimerase	8	248	3.2e-24	86.4
TkA03G554680	`PF08659`	KR	8	136	4.7e-05	24.1
TkA03G554680	`PF02719`	Polysacc_synt_2	8	133	0.0057	16.6
TkA03G554680	`PF01073`	3Beta_HSD	10	243	6.3e-21	75.4
TkA03G554680	`PF07993`	NAD_binding_4	10	217	4.7e-16	59.4
TkA03G554680	`PF16363`	GDP_Man_Dehyd	10	196	6.8e-14	52.8
TkA03G554680	`PF13460`	NAD_binding_10	12	147	3.7e-10	40.7
TkA03G554680	`PF00106`	adh_short	178	194	0.00044	20.5
TkA03G554680	`PF05368`	NmrA	227	246	6.1e-09	36.6
TkA03G554680	`PF08659`	KR	295	319	4.7e-05	24.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q500U8`	Arabidopsis thaliana	sp\|Q500U8\|TKPR1_ARATH Tetraketide alpha-pyrone reductase 1	44.600%	Swiss-Prot	Medium

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