TkA03G550000 | RubberDandelionOmics

Gene overview

TkA03G550000

Reference: TK1151 Chr: Chr03 Coordinates: 139200425-139209987 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1914 bp · TkA03G550000|TK1151|cDNA

ATGACCATTGATATGACAAAAGAACGAATCAGGAACCTGTTCAACAATGTGGAACTCTCTGTTTCTTCATATGATACAGCCTGGGTAGCCATGGTTCCTTCTCCAAACTCTCCAAAGTCCCCTTGTTTCCTTAATTGTCTGAACTGGTTAATGGATAATCAGCTTGATGATGGTTCATGGGGTCTTCTTCATCGCCATTCGTCACTGATTAAAGATACTCTGTTTTCGACGTTAGTAAGTATACTTGCATTAAAACGATG...

CDS

Download CDS FASTA

1914 bp · TkA03G550000|TK1151|CDS

ATGACCATTGATATGACAAAAGAACGAATCAGGAACCTGTTCAACAATGTGGAACTCTCTGTTTCTTCATATGATACAGCCTGGGTAGCCATGGTTCCTTCTCCAAACTCTCCAAAGTCCCCTTGTTTCCTTAATTGTCTGAACTGGTTAATGGATAATCAGCTTGATGATGGTTCATGGGGTCTTCTTCATCGCCATTCGTCACTGATTAAAGATACTCTGTTTTCGACGTTAGTAAGTATACTTGCATTAAAACGATG...

Protein

Download Protein FASTA

638 aa · TkA03G550000|TK1151|PROTEIN

MTIDMTKERIRNLFNNVELSVSSYDTAWVAMVPSPNSPKSPCFLNCLNWLMDNQLDDGSWGLLHRHSSLIKDTLFSTLVSILALKRWNVGKYQIDKGLHFIESNFDLVNDKNQVSPIGFDIIFPCMLEYAKDLNIKLPLNQSDLDLMLHERELELRRCHSNGREAYLAYISEGLGNYNDWNMVMKYQMKNGSLFNSPSATASVLIHHQAATGLNYLTSLLDKFGNAVPTVYPHDLYVRLCMVDSLERLGITQHFKMEIQD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G550000`
TK1151 ID	TkA03G550000
OH-1004 ID	LXL04_010816
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	77.300
Protein coverage (%)	TK1151 100.000 / OH-1004 82.727 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA03G550000`
Location	Chr03:139200425-139209987 (+)
Description	Similar to KS: Ent-kaur-16-ene synthase, chloroplastic
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_010816` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0009686 gibberellin biosynthetic process Biological Process GO:0016114 terpenoid biosynthetic process Biological Process GO:0033331 ent-kaurene metabolic process Biological Process GO:0033332 ent-kaurene biosynthetic process Biological Process GO:0009507 chloroplast Cellular Component GO:0000287 magnesium ion binding Molecular Function GO:0009899 ent-kaurene synthase activity Molecular Function GO:0102161 copal-8-ol diphosphate synthase activity Molecular Function
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.619

Rank 1 · TkA03G550000 · TK1151

Plastid0.375

Rank 2 · TkA03G550000 · TK1151

Nucleus0.183

Rank 3 · TkA03G550000 · TK1151

Peroxisome0.065

Rank 4 · TkA03G550000 · TK1151

Endoplasmic reticulum0.040

Rank 5 · TkA03G550000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01397Terpene_synth179-364 aa

PF03936Terpene_synth_C442-638 aa

PF19086Terpene_syn_C_2479-638 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G550000	`PF01397`	Terpene_synth	179	364	8.3e-33	114.4
TkA03G550000	`PF03936`	Terpene_synth_C	442	638	1.1e-54	186.0
TkA03G550000	`PF19086`	Terpene_syn_C_2	479	638	7.9e-34	117.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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