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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G549980
Reference: TK1151 Chr: Chr03 Coordinates: 139181235-139198356 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2764 bp · TkA03G549980|TK1151|cDNA

CACATGGGCAAAACACTTCTCAAATCTGCAGACCTCTTCTTCCCAAAAAGAAAACCTTGCTAATTCCCTTGCTGCTCCGTATGCGACGAAGACCACCAACACAATCGACCTCCGGCGATGCTCCAACTCCGTCGAATAGGACTTTTCTCCGGCGCCGGTGCTGCTCCAGCTCACTCGACTTCAGGGTGGGATGTAAGAAAACAAGATGGATGCACAGTCAAATTGATTTGGATGGAGATGGTTTTAAGCCAATATGTGTG...

CDS

Download CDS FASTA

5259 bp · TkA03G549980|TK1151|CDS

ATGGAGATTATATTAGCTATCATGAGTCCAATTGTTGAAAGTGTATTGGTTCCTGTCAAGAGACATGTGAGTTATCTGTTTTCCTCCACACAACATGTTAGGAAAATGGATACTCGAATAAAGCAACTGGATGGTACAAGCATTGATGCCAAAAAGAAAAAGGAGACGAACATCACCGGCAATCTCGAAATTCCAACTCGTGTACCGGATTGGTTGGAAGAAGTTGAAGATGTTAAGAAACGTGCTCATGGCATTTCAAG...

Protein

Download Protein FASTA

1752 aa · TkA03G549980|TK1151|PROTEIN

MEIILAIMSPIVESVLVPVKRHVSYLFSSTQHVRKMDTRIKQLDGTSIDAKKKKETNITGNLEIPTRVPDWLEEVEDVKKRAHGISSTGCGCFNMKMRYRAGRNAFKITKEIVDLDEEYSKIIWNDTPKPLGKVNSKNASTSGKSNGDSQNDFRSREKSFNDALSFLQQDHTSQVIGLCGMGGVGKTTMMEQLKKATIEKKTFDYVVKVVIGQQINMFSVQQAVAEYMGQPLNETSKTARADRLRITFEKLPEGRRKVLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G549980
TK1151 IDTkA03G549980
OH-1004 IDLXL04_010804
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)98.000
Protein coverage (%)TK1151 99.772 / OH-1004 99.944
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G549980
LocationChr03:139181235-139198356 (+)
DescriptionSimilar to At4g27220: Probable disease resistance protein At4g27220
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g27190 Disease resistance protein. No verified direct reference in this release
At1g15890 Probable disease resistance protein. No verified direct reference in this release
At4g27220 Probable disease resistance protein. No verified direct reference in this release
At5g05400 Potential disease resistance protein. No verified direct reference in this release
At1g63350 Potential disease resistance protein. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010804 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0006952 defense response Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0016045 detection of bacterium Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0043531 ADP binding Molecular Function
KEGG gene cross-reference
ath:AT1G63350
ath:AT4G26090
ath:AT4G27190
ath:AT4G27220
ath:AT5G47250
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.605
Rank 1 · TkA03G549980 · TK1151
Cytoplasm0.264
Rank 2 · TkA03G549980 · TK1151
Nucleus0.204
Rank 3 · TkA03G549980 · TK1151
Endoplasmic reticulum0.086
Rank 4 · TkA03G549980 · TK1151
Extracellular0.048
Rank 5 · TkA03G549980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01637ATPase_2153-272 aa
PF13191AAA_16156-205 aa
PF00931NB-ARC157-321 aa
PF20720nSTAND3157-201 aa
PF25201nSTAND6159-231 aa
PF03193RsgA_GTPase162-196 aa
PF03308MeaB171-199 aa
PF13401AAA_22172-264 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G549980PF01637ATPase_21532720.003717.8
TkA03G549980PF13191AAA_161562050.1813.0
TkA03G549980PF00931NB-ARC1573212.5e-2589.7
TkA03G549980PF20720nSTAND31572010.01715.5
TkA03G549980PF25201nSTAND61592310.2112.3
TkA03G549980PF03193RsgA_GTPase1621960.1212.9
TkA03G549980PF03308MeaB1711990.2511.1
TkA03G549980PF13401AAA_221722640.02715.5
TkA03G549980PF13604AAA_301732390.01815.5
TkA03G549980PF13173AAA_141742060.212.4
TkA03G549980PF13238AAA_181762700.001419.9
TkA03G549980PF05729NACHT1762670.01915.6
TkA03G549980PF03029ATP_bind_11792070.1912.2
TkA03G549980PF01637ATPase_23654050.003717.8
TkA03G549980PF13191AAA_164634910.1813.0
TkA03G549980PF25019LRR_R13L1-DRL215516108.7e-0936.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9T048Arabidopsis thalianasp|Q9T048|DRL27_ARATH Disease resistance protein At4g2719022.600%Swiss-ProtLow
Q9LMP6Arabidopsis thalianasp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g1589022.800%Swiss-ProtLow
O81825Arabidopsis thalianasp|O81825|DRL28_ARATH Probable disease resistance protein At4g2722026.300%Swiss-ProtLow
Q9FLB4Arabidopsis thalianasp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g0540022.600%Swiss-ProtLow
Q9C8T9Arabidopsis thalianasp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g6335025.700%Swiss-ProtLow

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