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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G549450
Reference: TK1151 Chr: Chr03 Coordinates: 139013532-139022086 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

7150 bp · TkA03G549450|TK1151|cDNA

TGTTTATTATATTTTCATTTAAAACTCGAGTTTGAGTTTTCTTTCCGGATATTTACAAGTTAAGAAATCGTCCATGGAACGGTGACATTAGATTTTCACTCATCGCCACTCGCCAGTGGTCGTTGCTACCGCAGTCTAACCACCGGTAAAAACTATCCTGCCATTTCTTTCTTCCCCTCCGCCAGAAACCAATGCAGGTGCCGACTAAGGACACCGGAAATGCCACCTCCTGCACCGCCGCCACCGAAGTGAGCACCAAC...

CDS

Download CDS FASTA

1653 bp · TkA03G549450|TK1151|CDS

ATGGTCCATCTGAAAATTACCTCGTATCTAAGTTTTCTCCTTCCGTCCGCTTATGAAAACGGCGACTTCTGGAAATCAAGTTTCCTGGAGTGGGCATTGGGGAATTACTATAAAGCTTATATGAGTTTAATTGGTGAACAAGTGGATTTTTCAAGCAATAACTTGGCGTTTACAGATCCAAGCATCGGTCAATATTGTCAAACGTTGACCAATAAAAACCAGATGAAAAAACGCAATTGGAGAACAAAATACAGCGGTTC...

Protein

Download Protein FASTA

550 aa · TkA03G549450|TK1151|PROTEIN

MVHLKITSYLSFLLPSAYENGDFWKSSFLEWALGNYYKAYMSLIGEQVDFSSNNLAFTDPSIGQYCQTLTNKNQMKKRNWRTKYSGSCQMAVLMTSTALVDAVYLIFSGSTQSSLGNSEPVILNERLNPSSSSSNWVLGDVALCNLSHAKYSFAMQHISNILKEHPSWPENKTQHENIQYDSLVSNFGKKLNSELAYFEQKYSLIRHHLINMIIVYLYNHGHMLIACDILQREDISNRNPSYPSLPGVIVKSIEDFSYLF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G549450
TK1151 IDTkA03G549450
OH-1004 IDLXL04_010797
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)92.500
Protein coverage (%)TK1151 97.818 / OH-1004 23.872
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G549450
LocationChr03:139013532-139022086 (-)
DescriptionSimilar to RAV1: Regulator of V-ATPase in vacuolar membrane protein 1 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010797 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007035 vacuolar acidification Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0015031 protein transport Biological Process
GO:0032880 regulation of protein localization Biological Process
GO:0042593 glucose homeostasis Biological Process
GO:0043254 regulation of protein-containing complex assembly Biological Process
GO:0045022 early endosome to late endosome transport Biological Process
GO:0070070 proton-transporting V-type ATPase complex assembly Biological Process
GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly Biological Process
GO:0005615 extracellular space Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0012505 endomembrane system Cellular Component
KEGG gene cross-reference
hsa:1657
hsa:23312
mmu:240283
sce:YJR033C
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.498
Rank 1 · TkA03G549450 · TK1151
Cytoplasm0.335
Rank 2 · TkA03G549450 · TK1151
Cell membrane0.107
Rank 3 · TkA03G549450 · TK1151
Endoplasmic reticulum0.084
Rank 4 · TkA03G549450 · TK1151
Golgi apparatus0.072
Rank 5 · TkA03G549450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser