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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G537700
Reference: TK1151 Chr: Chr03 Coordinates: 135368732-135373964 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1115 bp · TkA03G537700|TK1151|cDNA

TAAAAGATAAAAACTTTATTAGAGATTTCCTTATCTTAAAAGGAGAGAACCATAATACTTTTGTAGCACACAATAAAAAATCGAAAAGAGGATGCCTAAATGGCAACATCAAAGCGTAAATTAGACATTTCAGGTATATATATATATATATATGGTCCTCATGTTCACGGAATCCAAATATTCCTCCGTTTGGTCTCTTCTCTAGATCTTCGACGTCAATATCAAGTCGCCATGAACGACGGACTAATCGAGCTCATTAT...

CDS

Download CDS FASTA

618 bp · TkA03G537700|TK1151|CDS

ATGGCAACATCAAAGCGTAAATTAGACATTTCAGGTATATATATATATATATATGGTCCTCATGTTCACGGAATCCAAATATTCCTCCGTTTGGTCTCTTCTCTAGATCTTCGACGTCAATATCAAGTCGCCATGAACGACGGACTAATCGAGCTCATTATCTCCAAATTATCCAGCACCGTCGTCTTAATTCTCACCAACAAGTCCAATATATTTGTCACCGTCGTCGCCGTTCACATCCTCCGCCGCATTCTCAAAAC...

Protein

Download Protein FASTA

205 aa · TkA03G537700|TK1151|PROTEIN

MATSKRKLDISGIYIYIYGPHVHGIQIFLRLVSSLDLRRQYQVAMNDGLIELIISKLSSTVVLILTNKSNIFVTVVAVHILRRILKTIYHRHQFPIFTAKHNKYTNTSTKPLYCAVCLHDVDGGQRYRRLPKCRHCFHVNCIDPWLESRSTCPLCRNEIPIHLLPRKEEKEPGFLYLFFYFSMKAIRRRIESNFNKMMLFEATAL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G537700
TK1151 IDTkA03G537700
OH-1004 IDLXL04_010623
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.400
Protein coverage (%)TK1151 83.415 / OH-1004 43.959
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G537700
LocationChr03:135368732-135373964 (+)
DescriptionSimilar to ATL46: RING-H2 finger protein ATL46
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g40070 RING-H2 finger protein ATL32. No verified direct reference in this release
At1g53820 RING-H2 finger protein ATL60. No verified direct reference in this release
At2g20030 Putative RING-H2 finger protein ATL12. No verified direct reference in this release
At1g72310 RING-H2 finger protein ATL3. No verified direct reference in this release
At1g23980 RING-H2 finger protein ATL47. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010623 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G23980
ath:AT1G53820
ath:AT3G16720
ath:AT4G40070
ath:AT5G40250
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.337
Rank 1 · TkA03G537700 · TK1151
Nucleus0.238
Rank 2 · TkA03G537700 · TK1151
Cytoplasm0.208
Rank 3 · TkA03G537700 · TK1151
Cell membrane0.153
Rank 4 · TkA03G537700 · TK1151
Golgi apparatus0.147
Rank 5 · TkA03G537700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17120zf-RING_1668-81 aa
PF04641Rtf2100-169 aa
PF29721TMEM129_C102-161 aa
PF23413zf_RING_Vps8_fungal112-117 aa
PF13923zf-C3HC4_2113-155 aa
PF13920zf-C3HC4_3113-159 aa
PF17120zf-RING_16113-153 aa
PF23145Zf_2nd_IFT121113-120 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G537700PF17120zf-RING_1668810.212.0
TkA03G537700PF04641Rtf21001690.07613.1
TkA03G537700PF29721TMEM129_C1021610.3711.8
TkA03G537700PF23413zf_RING_Vps8_fungal1121170.04513.8
TkA03G537700PF13923zf-C3HC4_21131553.5e-0627.4
TkA03G537700PF13920zf-C3HC4_31131590.113.1
TkA03G537700PF17120zf-RING_161131530.212.0
TkA03G537700PF23145Zf_2nd_IFT1211131200.5810.6
TkA03G537700PF26037zf-RING_DCST1_C1131574.48.1
TkA03G537700PF13639zf-RING_21141568.3e-1349.1
TkA03G537700PF17123zf-RING_111141423e-0833.9
TkA03G537700PF00097zf-C3HC41141552.7e-0524.6
TkA03G537700PF14634zf-RING_51141560.01316.2
TkA03G537700PF13445zf-RING_UBOX1141530.01715.8
TkA03G537700PF14447Prok-RING_41141270.6510.6
TkA03G537700PF12861zf-ANAPC111301591.1e-0526.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8W571Arabidopsis thalianasp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL3242.400%Swiss-ProtLow
P0C035Arabidopsis thalianasp|P0C035|ATL60_ARATH RING-H2 finger protein ATL6060.400%Swiss-ProtLow
Q9SL78Arabidopsis thalianasp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL1256.000%Swiss-ProtLow
Q9XF63Arabidopsis thalianasp|Q9XF63|ATL3_ARATH RING-H2 finger protein ATL354.200%Swiss-ProtLow
Q8GW38Arabidopsis thalianasp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL4739.800%Swiss-ProtLow

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