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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G537400
Reference: TK1151 Chr: Chr03 Coordinates: 135276621-135280027 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1389 bp · TkA03G537400|TK1151|cDNA

TTTAAACCGAATAAAACCCGAACGACAAATGACTCGGTCCTGTATAAATACCCAACCATCAGTTAAGACCGACGTACCCATACGTAATTCTGCCAGATCTTTTCATTCCCTCTGCGTTTCTTTCCATTCTCCACTGATTTTCTTCATTTTGGTAAGCTCCACATCTATTGTCCTTATTATACCTACTGATCTGGATAAACCTCCATGGATTTCCGGTTTTTCATATGATTCTACTCGGTGCCACGTGTCAGATCTTGTTC...

CDS

Download CDS FASTA

633 bp · TkA03G537400|TK1151|CDS

ATGGGTTCTGTTGTTGAAGCTGCAAACAAGGAAGCAAGTGGAAGTTCTCTTAGTCAAAAGAAGCCCAAGGTTGTATTTGTCCTAGGAGGCCCAGGGAGTGGTAAGGGTACCCAATGTGCAAATATTGTGGAACACTTTGGGTACACTCATCTCAGTGCTGGTGATCTTCTTCGGGCAGAAATTAAATCTGGGTCAGAAAACGGGACCATGATTCAGAACATGATCAAGGAGGGAAAAATCGTTCCTTCAGAAGTAACAAT...

Protein

Download Protein FASTA

210 aa · TkA03G537400|TK1151|PROTEIN

MGSVVEAANKEASGSSLSQKKPKVVFVLGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLEKAILENENDKFLIDGFPRNEENRAAFESVTGITPEFVLFFDCPQEEMEKRLLGRNQGREDDNIETIRKRFKVFLESSLPVIEYYNSKEKVRKIDAAKPVGEVFEAVKALFTPVVDTAAF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G537400
TK1151 IDTkA03G537400
OH-1004 IDLXL04_010621
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 98.571 / OH-1004 94.521
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G537400
LocationChr03:135276621-135280027 (+)
DescriptionSimilar to UMK3: UMP-CMP kinase 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g26667 Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. No verified direct reference in this release
At3g60180 Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0778400 Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. No verified direct reference in this release
Os07g0624700 Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. No verified direct reference in this release
Os06g0109600 Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_010621 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process Biological Process
GO:0006221 pyrimidine nucleotide biosynthetic process Biological Process
GO:0006225 UDP biosynthetic process Biological Process
GO:0009173 pyrimidine ribonucleoside monophosphate metabolic process Biological Process
GO:0046705 CDP biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009536 plastid Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0033862 UMP kinase activity Molecular Function
GO:0036430 CMP kinase activity Molecular Function
KEGG gene cross-reference
ath:AT3G60180
ath:AT5G26667
dosa:Os02g0778400
dosa:Os06g0109600
dosa:Os07g0624700
osa:4339882
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.637
Rank 1 · TkA03G537400 · TK1151
Nucleus0.295
Rank 2 · TkA03G537400 · TK1151
Mitochondrion0.177
Rank 3 · TkA03G537400 · TK1151
Cell membrane0.135
Rank 4 · TkA03G537400 · TK1151
Endoplasmic reticulum0.081
Rank 5 · TkA03G537400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25199nSTAND_NTPase54-37 aa
PF00931NB-ARC15-46 aa
PF06414Zeta_toxin16-41 aa
PF24883NPHP3_N19-46 aa
PF13245AAA_1921-50 aa
PF00448SRP5422-121 aa
PF13671AAA_3324-161 aa
PF13238AAA_1825-152 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G537400PF25199nSTAND_NTPase54370.1412.7
TkA03G537400PF00931NB-ARC15460.0813.2
TkA03G537400PF06414Zeta_toxin16410.001918.4
TkA03G537400PF24883NPHP3_N19460.3111.9
TkA03G537400PF13245AAA_1921500.007317.2
TkA03G537400PF00448SRP54221210.1512.4
TkA03G537400PF13671AAA_33241612.2e-0628.7
TkA03G537400PF13238AAA_18251528.4e-0936.7
TkA03G537400PF00406ADK271792.9e-49167.8
TkA03G537400PF13207AAA_17281585e-37127.9
TkA03G537400PF02223Thymidylate_kin30811.6e-0628.6
TkA03G537400PF25199nSTAND_NTPase5741000.1412.7
TkA03G537400PF02223Thymidylate_kin1181961.6e-0628.6
TkA03G537400PF22215MLKL_N1451980.08513.1
TkA03G537400PF00448SRP541832040.1512.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O04905Arabidopsis thalianasp|O04905|KCY3_ARATH UMP-CMP kinase 383.300%Swiss-ProtHigh
Q8VY84Arabidopsis thalianasp|Q8VY84|KCY1_ARATH Probable UMP-CMP kinase 175.300%Swiss-ProtHigh
Q6K7H2Oryza sativa subsp. japonicasp|Q6K7H2|KCY4_ORYSJ UMP-CMP kinase 477.600%Swiss-ProtHigh
Q7XI40Oryza sativa subsp. japonicasp|Q7XI40|KCY3_ORYSJ UMP-CMP kinase 380.000%Swiss-ProtHigh
Q5VRN0Oryza sativa subsp. japonicasp|Q5VRN0|KCY1_ORYSJ UMP-CMP kinase 163.700%Swiss-ProtHigh

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