TkA03G531060 | RubberDandelionOmics

Gene overview

TkA03G531060

Reference: TK1151 Chr: Chr03 Coordinates: 133529705-133530076 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

372 bp · TkA03G531060|TK1151|cDNA

ACGCAGGGTTTTAGAAAGATTGATCCAGATGTGTGGGAGTTTGCGAATGAGGCGTTCGTGAGGGGTCAAAGGCACGTGTTGAAGAACATCAAGAGAAGACGCGCTCCTTCTTCTCAGGGCTCCGGTAGCCCTGAAACATTCGGATTAGATGAAGTCGGACAACTTCAAGCCATGGATTTAAGGTTACGTGGAACAGAGAAGAAGCAGCAGAAGATGATGAGTTTCTTGGCGAAAGCTATGCAGAATCCCGAAGATTTGAC...

CDS

Download CDS FASTA

372 bp · TkA03G531060|TK1151|CDS

ACGCAGGGTTTTAGAAAGATTGATCCAGATGTGTGGGAGTTTGCGAATGAGGCGTTCGTGAGGGGTCAAAGGCACGTGTTGAAGAACATCAAGAGAAGACGCGCTCCTTCTTCTCAGGGCTCCGGTAGCCCTGAAACATTCGGATTAGATGAAGTCGGACAACTTCAAGCCATGGATTTAAGGTTACGTGGAACAGAGAAGAAGCAGCAGAAGATGATGAGTTTCTTGGCGAAAGCTATGCAGAATCCCGAAGATTTGAC...

Protein

Download Protein FASTA

123 aa · TkA03G531060|TK1151|PROTEIN

TQGFRKIDPDVWEFANEAFVRGQRHVLKNIKRRRAPSSQGSGSPETFGLDEVGQLQAMDLRLRGTEKKQQKMMSFLAKAMQNPEDLTGNCPTFVVISADDGDEGGWLWRECWRRWVSTVMLKG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G531060`
TK1151 ID	TkA03G531060
OH-1004 ID	LXL04_007259
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.500
Protein coverage (%)	TK1151 95.122 / OH-1004 99.160 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G531060

Location Chr03:133529705-133530076 (-)

Description Similar to HSFA2B: Heat stress transcription factor A-2b

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51910`	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).	No verified direct reference in this release
`At3g22830`	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).	No verified direct reference in this release
`At4g17750`	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).	No verified direct reference in this release
`At3g24520`	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0178600`	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007259 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001666 response to hypoxia Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0009408 response to heat Biological Process

GO:0010286 heat acclimation Biological Process

GO:0034605 cellular response to heat Biological Process

GO:0034620 cellular response to unfolded protein Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0071456 cellular response to hypoxia Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

KEGG gene cross-reference

ath:AT2G26150

dosa:Os03g0161900

dosa:Os03g0795900

dosa:Os07g0178600

dosa:Os10g0419300

osa:4331707

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.756

Rank 1 · TkA03G531060 · TK1151

Cytoplasm0.244

Rank 2 · TkA03G531060 · TK1151

Cell membrane0.066

Rank 3 · TkA03G531060 · TK1151

Endoplasmic reticulum0.047

Rank 4 · TkA03G531060 · TK1151

Mitochondrion0.035

Rank 5 · TkA03G531060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00447HSF_DNA-bind8-33 aa

PF16064DUF480647-94 aa

PF00447HSF_DNA-bind69-75 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G531060	`PF00447`	HSF_DNA-bind	8	33	0.0033	18.6
TkA03G531060	`PF16064`	DUF4806	47	94	0.073	14.1
TkA03G531060	`PF00447`	HSF_DNA-bind	69	75	0.0033	18.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SV12`	Arabidopsis thaliana	sp\|Q9SV12\|HFA7A_ARATH Heat stress transcription factor A-7a	46.200%	Swiss-Prot	Medium
`Q9LUH8`	Arabidopsis thaliana	sp\|Q9LUH8\|HFA6B_ARATH Heat stress transcription factor A-6b	40.500%	Swiss-Prot	Medium
`P41151`	Arabidopsis thaliana	sp\|P41151\|HFA1A_ARATH Heat stress transcription factor A-1a	36.000%	Swiss-Prot	Medium
`Q9LV52`	Arabidopsis thaliana	sp\|Q9LV52\|HSFC1_ARATH Heat stress transcription factor C-1	40.600%	Swiss-Prot	Medium
`Q6VBB2`	Oryza sativa subsp. japonica	sp\|Q6VBB2\|HFA2B_ORYSJ Heat stress transcription factor A-2b	43.800%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card