TkA03G483270 | RubberDandelionOmics

Gene overview

TkA03G483270

Reference: TK1151 Chr: Chr03 Coordinates: 120865350-120867940 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

945 bp · TkA03G483270|TK1151|cDNA

CTCCAAACCGCTCCTTATATACGTCTTCTCCCTCAAATGCACCACCCACCCTCCCACTCTCTACCTCTCAACGAAAATCCCTTTCCTAGGATTCACCGTCAACGAAAACGTCAATGGCAACCATCAATGGAGGAAGTTGTTCATCAAATTCGAACGCCTCATCTCTTGCCTCTCATCAATCCTCGATGATGCTTCTTCATCACTTCGGTGTAGTCATTCTCACATTAGGTTTCTCAATATATTATCCAACTCCTACAATT...

CDS

Download CDS FASTA

567 bp · TkA03G483270|TK1151|CDS

ATGTTTGGCCCTGTGGGGGTCTTCAAGACTACTACCATGACGCCTCTTCCCTTCCTACGTATATTCCGGCAGCTGGAAAATTCGTCTCTGTTGTTCCTCATCCGTCGCCGATTCAACAGACGAGAATCAATTAAAGTACACCGCATTTCAAACTTCAGAGAGAGAAGTACATTCATCTTAACGAAATACCTATCGTTGAAAACTAAAGAACAAGTACGAAATTCATCCAGGTCTTTGGAGTCCTCATCACCAGCATTTAG...

Protein

Download Protein FASTA

188 aa · TkA03G483270|TK1151|PROTEIN

MFGPVGVFKTTTMTPLPFLRIFRQLENSSLLFLIRRRFNRRESIKVHRISNFRERSTFILTKYLSLKTKEQVRNSSRSLESSSPAFSSALADIQVQVMHCLKRRADDLKNSFLFNAQQIRKVIKENKDLYLPTHKQVMVATIQCEGNAHGKCSFFVTNEVHIMVANDIQTLFFYIFELILSFCRIRLR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G483270`
TK1151 ID	TkA03G483270
OH-1004 ID	LXL04_036790
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	56.000
Protein coverage (%)	TK1151 26.596 / OH-1004 6.355 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G483270

Location Chr03:120865350-120867940 (+)

Description Similar to RHD3: Protein ROOT HAIR DEFECTIVE 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g72960`	Probable GTP-binding protein that may be involved in cell development.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036790 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport Biological Process

GO:0009832 plant-type cell wall biogenesis Biological Process

GO:0009932 cell tip growth Biological Process

GO:0010053 root epidermal cell differentiation Biological Process

GO:0016320 endoplasmic reticulum membrane fusion Biological Process

GO:0030036 actin cytoskeleton organization Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

KEGG gene cross-reference

ath:AT1G72960

ath:AT3G13870

ath:AT5G45160

dosa:Os01g0575000

dosa:Os12g0604600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.359

Rank 1 · TkA03G483270 · TK1151

Cytoplasm0.336

Rank 2 · TkA03G483270 · TK1151

Mitochondrion0.242

Rank 3 · TkA03G483270 · TK1151

Cell membrane0.071

Rank 4 · TkA03G483270 · TK1151

Endoplasmic reticulum0.057

Rank 5 · TkA03G483270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01736Polyoma_agno34-48 aa

PF05879RHD3_GTPase102-132 aa

PF01736Polyoma_agno168-184 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G483270	`PF01736`	Polyoma_agno	34	48	1.3	9.7
TkA03G483270	`PF05879`	RHD3_GTPase	102	132	0.12	12.4
TkA03G483270	`PF01736`	Polyoma_agno	168	184	1.3	9.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SSN0`	Arabidopsis thaliana	sp\|Q9SSN0\|RHD31_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 1	39.400%	Swiss-Prot	Low

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