TkA03G432320 | RubberDandelionOmics

Gene overview

TkA03G432320

Reference: TK1151 Chr: Chr03 Coordinates: 107550104-107554277 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1478 bp · TkA03G432320|TK1151|cDNA

CAAATATAGTCTCGAATCAAATTTGTGTAGCTTTAGTATAATAAACTTAAGGACCATAGAGGCTTGTTGCAAAACTGCAAGGAGTGCATTAGGCATTTGTGAATGTATGAAGGACTATTTGGGTAAATCGAAGGAAAAATGGAAGTTCACAAATAATTTCTCTTCGACTCACACACATAGCATTGACGAGGTGAATCGGGCGGAAGTTCCACAAGGTACTTACTACAGTCGCTTATGATCCGAACCAGGTGTCCTTGATT...

CDS

Download CDS FASTA

1101 bp · TkA03G432320|TK1151|CDS

ATGCTACGTTGCTACTGGATCAGTTTCCTTTTGTCACTTTCCTGTTTCTTTGGGGTTCTTCAGGCAAGTATTGGTGATGTTGACCCCTCATATAGGTCATGCCTAATAGACTGTGAGAAAATTGGATGTGTGGGTGATATATGCTTTCCACACTGCAACTTCACATCTAATGGTGGACCTTGGTACATGCAAGAACCTCAGTATCTCCAATGGAAGCTATGGGGTTGCCAAAGTGACTGTAGGTACCATTGTATGCTTAA...

Protein

Download Protein FASTA

366 aa · TkA03G432320|TK1151|PROTEIN

MLRCYWISFLLSLSCFFGVLQASIGDVDPSYRSCLIDCEKIGCVGDICFPHCNFTSNGGPWYMQEPQYLQWKLWGCQSDCRYHCMLNREQERASSGQKPVKYHGKWPFKRVFGIQEPASVAFSALNLAMHFHGWLSFFILLHYKLPMRPDKKPYYDYAGLWHMYGLLALNSWFWSVVFHSRDVELTEKLDYFSAIALLGYSLIVSILRTFTVKLEAARVMVSAPLLAFLTTHILYLNNYKLDYGNPPIYNSPPTLPPTFN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G432320`
TK1151 ID	TkA03G432320
OH-1004 ID	LXL04_009385
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.600
Protein coverage (%)	TK1151 99.727 / OH-1004 94.560 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G432320`
Location	Chr03:107550104-107554277 (-)
Description	Similar to pgap3: Post-GPI attachment to proteins factor 3
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_009385` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006505 GPI anchor metabolic process Biological Process GO:0006506 GPI anchor biosynthetic process Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0031410 cytoplasmic vesicle Cellular Component GO:0016788 hydrolase activity, acting on ester bonds Molecular Function
KEGG gene cross-reference	dre:100136873 mmu:320655 spo:2543664 xla:447380 xtr:779696 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.460

Rank 1 · TkA03G432320 · TK1151

Golgi apparatus0.207

Rank 2 · TkA03G432320 · TK1151

Cell membrane0.150

Rank 3 · TkA03G432320 · TK1151

Cytoplasm0.127

Rank 4 · TkA03G432320 · TK1151

Nucleus0.107

Rank 5 · TkA03G432320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04080Per166-244 aa

PF02260FATC125-138 aa

PF04080Per1272-354 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G432320	`PF04080`	Per1	66	244	1.1e-92	311.1
TkA03G432320	`PF02260`	FATC	125	138	0.053	13.9
TkA03G432320	`PF04080`	Per1	272	354	1.1e-92	311.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card