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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G537580
Reference: TK1151 Chr: Chr02 Coordinates: 138652638-138653150 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

480 bp · TkA02G537580|TK1151|cDNA

ATGAACGCCACAGTGGACGGCGTAGAACCACCACACACAAATAACAACGGTAAACTCCACGGAGGCGACGCCTACATATTTATTATCGGATTCTTCTGCATCACCGTCCTTCTACTCTCACTCACCTATGTCTCCTACGTCTGCAAGCGCTCTAGATTACCACCGCCACCCACCATCTCTTTCGGTACCATCACCTCCGATGATCCTCACAACCACCACCTAATAAGCTTGTCTCACGGCCTTGATGATAATGTACTTGT...

CDS

Download CDS FASTA

480 bp · TkA02G537580|TK1151|CDS

ATGAACGCCACAGTGGACGGCGTAGAACCACCACACACAAATAACAACGGTAAACTCCACGGAGGCGACGCCTACATATTTATTATCGGATTCTTCTGCATCACCGTCCTTCTACTCTCACTCACCTATGTCTCCTACGTCTGCAAGCGCTCTAGATTACCACCGCCACCCACCATCTCTTTCGGTACCATCACCTCCGATGATCCTCACAACCACCACCTAATAAGCTTGTCTCACGGCCTTGATGATAATGTACTTGT...

Protein

Download Protein FASTA

159 aa · TkA02G537580|TK1151|PROTEIN

MNATVDGVEPPHTNNNGKLHGGDAYIFIIGFFCITVLLLSLTYVSYVCKRSRLPPPPTISFGTITSDDPHNHHLISLSHGLDDNVLVTFPTFLYSDVKMTHKGCSICLADYKPADVVRLLPECGHLFHVKCVDTWLKAHPTCPMCRNSVFAGRMPPGNN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G537580
TK1151 IDTkA02G537580
OH-1004 IDLXL04_012798
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)92.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G537580
LocationChr02:138652638-138653150 (+)
DescriptionSimilar to ATL71: Putative RING-H2 finger protein ATL71
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g06490 Putative RING-H2 finger protein ATL71. No verified direct reference in this release
At2g35910 RING-H2 finger protein ATL70. No verified direct reference in this release
At3g05200 E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. No verified direct reference in this release
At2g34990 RING-H2 finger protein ATL38. No verified direct reference in this release
At2g27940 RING-H2 finger protein ATL57. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012798 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0010200 response to chitin Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT2G35000
ath:AT2G35910
ath:AT3G05200
ath:AT4G40070
ath:AT5G06490
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.345
Rank 1 · TkA02G537580 · TK1151
Cell membrane0.297
Rank 2 · TkA02G537580 · TK1151
Endoplasmic reticulum0.217
Rank 3 · TkA02G537580 · TK1151
Cytoplasm0.190
Rank 4 · TkA02G537580 · TK1151
Golgi apparatus0.131
Rank 5 · TkA02G537580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27898C3orf18_N26-53 aa
PF23555zf-RING_Vps4128-33 aa
PF15227zf-C3HC4_432-48 aa
PF17707DUF555345-149 aa
PF14570zf-RING_493-112 aa
PF04641Rtf298-121 aa
PF29452FAR1_N99-115 aa
PF14446Prok-RING_1100-132 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G537580PF27898C3orf18_N26530.01216.3
TkA02G537580PF23555zf-RING_Vps4128331.29.5
TkA02G537580PF15227zf-C3HC4_432484.68.2
TkA02G537580PF17707DUF5553451490.01415.6
TkA02G537580PF14570zf-RING_4931120.1812.3
TkA02G537580PF04641Rtf2981210.749.8
TkA02G537580PF29452FAR1_N991154.48.1
TkA02G537580PF14446Prok-RING_11001320.212.6
TkA02G537580PF17120zf-RING_161011430.03614.4
TkA02G537580PF22191IBR_11011126.27.5
TkA02G537580PF13920zf-C3HC4_31021495.1e-0523.7
TkA02G537580PF13639zf-RING_21041464.9e-1556.2
TkA02G537580PF17123zf-RING_111041323e-1143.5
TkA02G537580PF12678zf-rbx11041465.6e-0936.8
TkA02G537580PF00097zf-C3HC41041458.5e-0935.9
TkA02G537580PF13923zf-C3HC4_21041451.4e-0835.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FG21Arabidopsis thalianasp|Q9FG21|ATL71_ARATH Putative RING-H2 finger protein ATL7135.600%Swiss-ProtMedium
Q8RX29Arabidopsis thalianasp|Q8RX29|ATL70_ARATH RING-H2 finger protein ATL7039.800%Swiss-ProtMedium
Q8RXX9Arabidopsis thalianasp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL639.800%Swiss-ProtMedium
O64762Arabidopsis thalianasp|O64762|ATL38_ARATH RING-H2 finger protein ATL3830.600%Swiss-ProtMedium
Q9SJJ7Arabidopsis thalianasp|Q9SJJ7|ATL57_ARATH RING-H2 finger protein ATL5741.300%Swiss-ProtLow

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