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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G527060
Reference: TK1151 Chr: Chr02 Coordinates: 135918136-135921455 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2163 bp · TkA02G527060|TK1151|cDNA

ATGGATGCCACTGATTTGCAAACAGATGCTGCTGAAATTGTTGCTCGAAGTGAAACTCAAGACAATGTTGAGGACAAAGATGAGAATGAAAGATGTATTTTGGTGAGGACCTTAAGAGGTTGGCTTTGTGACAAGTCTGTTATCCCCTTGAATGGTACTTCTTATCCTATTTCAAATCGGTTTTCAGGTTACGGATCGGGTATGGATCGGCATTTTATATTTTTAAATGGGTTTGGATCAAGGGCGATCCGCTCCAAACC...

CDS

Download CDS FASTA

2163 bp · TkA02G527060|TK1151|CDS

ATGGATGCCACTGATTTGCAAACAGATGCTGCTGAAATTGTTGCTCGAAGTGAAACTCAAGACAATGTTGAGGACAAAGATGAGAATGAAAGATGTATTTTGGTGAGGACCTTAAGAGGTTGGCTTTGTGACAAGTCTGTTATCCCCTTGAATGGTACTTCTTATCCTATTTCAAATCGGTTTTCAGGTTACGGATCGGGTATGGATCGGCATTTTATATTTTTAAATGGGTTTGGATCAAGGGCGATCCGCTCCAAACC...

Protein

Download Protein FASTA

720 aa · TkA02G527060|TK1151|PROTEIN

MDATDLQTDAAEIVARSETQDNVEDKDENERCILVRTLRGWLCDKSVIPLNGTSYPISNRFSGYGSGMDRHFIFLNGFGSRAIRSKPAPLPGLPARNDPPAITLEAIQKLLHDQQTQILTQVNRLIDERIGDSSRTLTQPQTQQNSPEVESHVESSVRRDPTPIPPLIIDPTTIQLGVKKCGYKDFMACRPKEFKGDKDPKVVINWIAEMEQVLFICRCEEEMKVGFACQMFKRRCIDLVEKLREAIGSEGISSLTWSEF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G527060
TK1151 IDTkA02G527060
OH-1004 IDLXL04_007131
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)44.600
Protein coverage (%)TK1151 85.694 / OH-1004 47.597
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G527060
LocationChr02:135918136-135921455 (-)
DescriptionSimilar to TY3B-I: Transposon Ty3-I Gag-Pol polyprotein (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007131 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006310 DNA recombination Biological Process
GO:0006508 proteolysis Biological Process
GO:0015074 DNA integration Biological Process
GO:0075523 viral translational frameshifting Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003723 RNA binding Molecular Function
GO:0003887 DNA-directed DNA polymerase activity Molecular Function
GO:0003964 RNA-directed DNA polymerase activity Molecular Function
GO:0004190 aspartic-type endopeptidase activity Molecular Function
GO:0004519 endonuclease activity Molecular Function
KEGG gene cross-reference
sce:YGR109W-B
sce:YIL082W-A
spo:2538755
spo:2541833
spo:2541991
spo:3361422
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.693
Rank 1 · TkA02G527060 · TK1151
Nucleus0.351
Rank 2 · TkA02G527060 · TK1151
Mitochondrion0.073
Rank 3 · TkA02G527060 · TK1151
Cell membrane0.058
Rank 4 · TkA02G527060 · TK1151
Endoplasmic reticulum0.055
Rank 5 · TkA02G527060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05773RWD97-132 aa
PF19259Ty3_capsid186-331 aa
PF03732PEG10_N-capsid190-268 aa
PF10025DUF2267252-294 aa
PF13917zf-CCHC_3361-380 aa
PF00098zf-CCHC363-379 aa
PF08284RVP_2399-528 aa
PF13975gag-asp_proteas425-509 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G527060PF05773RWD971320.04914.5
TkA02G527060PF19259Ty3_capsid1863312.2e-1041.0
TkA02G527060PF03732PEG10_N-capsid1902685.9e-0627.2
TkA02G527060PF10025DUF22672522940.1812.8
TkA02G527060PF13917zf-CCHC_33613804.28.0
TkA02G527060PF00098zf-CCHC3633790.001819.0
TkA02G527060PF08284RVP_23995281.1e-29103.7
TkA02G527060PF13975gag-asp_proteas4255090.00418.4
TkA02G527060PF13650Asp_protease_24295080.09214.2
TkA02G527060PF30863PRO_PEG10-RTL14305161.1e-0629.8
TkA02G527060PF02160Peptidase_A34335090.00616.8
TkA02G527060PF13917zf-CCHC_35535594.28.0
TkA02G527060PF02160Peptidase_A35986140.00616.8
TkA02G527060PF05773RWD6226420.04914.5
TkA02G527060PF10025DUF22676236600.1812.8
TkA02G527060PF00078RVT_16416830.0005420.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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