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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G525410
Reference: TK1151 Chr: Chr02 Coordinates: 135506022-135511604 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2603 bp · TkA02G525410|TK1151|cDNA

TTATACATACTCCGTTGGTTGCAAGATGCTTAGATGTCACATCGGCCACATTAGGCGACACCCCGCTGCTTGTGGAGGCTCTACGTTGTGGAGACCATTGCCGCCTCGTGGCCCAAAATGCCCTTCCCCTGTTCTCTCTTTTCGAGAGAGAACGATCGTGTTTGGATCTTTCCTGGATCCATCACTACAACCGGCTACCAGATAGGAGTTAGAACTCGTAGATCCTTTTACATGGGGTTACAACCGCTGCCGCTAGATTC...

CDS

Download CDS FASTA

1974 bp · TkA02G525410|TK1151|CDS

ATGGACTCCGGCGAGAGCAGTGACGAAAAATCACCAGCTGAGTTCTTTGCGGAGAATAAGAACATTGCCGGGTTTGACAACGTAAGCTCTATTCTTAATTTTCCTGGGAAATCCCTTTACACTACAGTGAGAGAGCTTGTTGAAAATGCACTTGATTCTGCAGAGTCCATTGCGGAGCTTCCATTAATTGAAGTAACAATTGAGGAGATTAATAAAAGCAAGTTCAATTCCATGATTGGTCTTATTGATCGGGAGCGAAT...

Protein

Download Protein FASTA

657 aa · TkA02G525410|TK1151|PROTEIN

MDSGESSDEKSPAEFFAENKNIAGFDNVSSILNFPGKSLYTTVRELVENALDSAESIAELPLIEVTIEEINKSKFNSMIGLIDRERIDEALYGDFETVKAREKRLAKEARFQEIQAKNSALGKKVKEPTAAKGMKGRGEASFYRVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMKNQSYTTFCRLDIDIHRNIPHIHLHEKRDDKENWHGAEIQVVIEGNWTTYRSKI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G525410
TK1151 IDTkA02G525410
OH-1004 IDLXL04_012978
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)94.700
Protein coverage (%)TK1151 99.848 / OH-1004 99.852
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G525410
LocationChr02:135506022-135511604 (-)
DescriptionSimilar to TOP6B: DNA topoisomerase 6 subunit B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g20780 Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles.
A crucial role for the putative Arabidopsis topoisomerase VI in plant growth and development.2002 · DOI: 10.1073/pnas.152337599
DNA topoisomerase VI is essential for endoreduplication in Arabidopsis.2002 · DOI: 10.1016/s0960-9822(02)01198-3

Rice

Reference gene IDPossible functionPapers / DOI
UniProt: B8BDQ4 Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. No verified direct reference in this release
Os09g0279600 Component of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012978 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000902 cell morphogenesis Biological Process
GO:0006260 DNA replication Biological Process
GO:0006265 DNA topological change Biological Process
GO:0007389 pattern specification process Biological Process
GO:0009741 response to brassinosteroid Biological Process
GO:0010026 trichome differentiation Biological Process
GO:0042023 DNA endoreduplication Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009330 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) complex Cellular Component
GO:0015935 small ribosomal subunit Cellular Component
GO:0003677 DNA binding Molecular Function
KEGG gene cross-reference
ape:APE_0706.1
ath:AT3G20780
dosa:Os09g0279600
osa:4346606
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.681
Rank 1 · TkA02G525410 · TK1151
Cytoplasm0.320
Rank 2 · TkA02G525410 · TK1151
Mitochondrion0.046
Rank 3 · TkA02G525410 · TK1151
Cell membrane0.034
Rank 4 · TkA02G525410 · TK1151
Endoplasmic reticulum0.030
Rank 5 · TkA02G525410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02518HATPase_c38-69 aa
PF13589HATPase_c_341-54 aa
PF02518HATPase_c142-211 aa
PF13589HATPase_c_3144-219 aa
PF00615RGS201-216 aa
PF00944Peptidase_S3228-247 aa
PF09239Topo-VIb_trans387-546 aa
PF00944Peptidase_S3409-479 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G525410PF02518HATPase_c38693.7e-0731.3
TkA02G525410PF13589HATPase_c_341541.3e-0629.2
TkA02G525410PF02518HATPase_c1422113.7e-0731.3
TkA02G525410PF13589HATPase_c_31442191.3e-0629.2
TkA02G525410PF00615RGS2012161.110.4
TkA02G525410PF00944Peptidase_S32282470.1312.8
TkA02G525410PF09239Topo-VIb_trans3875462.3e-56190.7
TkA02G525410PF00944Peptidase_S34094790.1312.8
TkA02G525410PF20897DUF68464354560.2412.9
TkA02G525410PF20897DUF68465005330.2412.9
TkA02G525410PF00615RGS5045691.110.4
TkA02G525410PF17569DUF54755185410.7510.9
TkA02G525410PF17569DUF54755766060.7510.9
TkA02G525410PF00615RGS5846361.110.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C5V6Arabidopsis thalianasp|Q9C5V6|TOP6B_ARATH DNA topoisomerase 6 subunit B79.300%Swiss-ProtHigh
B8BDQ4Oryza sativa subsp. indicasp|B8BDQ4|TOP6B_ORYSI DNA topoisomerase 6 subunit B77.500%Swiss-ProtHigh
Q6H442Oryza sativa subsp. japonicasp|Q6H442|TOP6B_ORYSJ DNA topoisomerase 6 subunit B77.300%Swiss-ProtHigh

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