RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G511110
Reference: TK1151 Chr: Chr02 Coordinates: 131240280-131241488 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1209 bp · TkA02G511110|TK1151|cDNA

ATGTCGAAAGGAAAGGAAAGCGAGACTGATGAATCAGACGGCGAAAAAGATGGTGAAGCCTATCCCCCCGATCATCAAAACTCCCTCGAACTCCGACTAGCTTCCAGTTCATCGGAGAAACCCCAGGATGCAGATTACTCTACTTACATTCCCTCACTCAGTTACGAGTTAGAAGGTTTAATCTTATCTCGATTCCCAAGATCAGACTACTGGAAACTATCCTTCGTGAACAAAAGATTTGCAAGCTTAGTAAAAACCGG...

CDS

Download CDS FASTA

1209 bp · TkA02G511110|TK1151|CDS

ATGTCGAAAGGAAAGGAAAGCGAGACTGATGAATCAGACGGCGAAAAAGATGGTGAAGCCTATCCCCCCGATCATCAAAACTCCCTCGAACTCCGACTAGCTTCCAGTTCATCGGAGAAACCCCAGGATGCAGATTACTCTACTTACATTCCCTCACTCAGTTACGAGTTAGAAGGTTTAATCTTATCTCGATTCCCAAGATCAGACTACTGGAAACTATCCTTCGTGAACAAAAGATTTGCAAGCTTAGTAAAAACCGG...

Protein

Download Protein FASTA

402 aa · TkA02G511110|TK1151|PROTEIN

MSKGKESETDESDGEKDGEAYPPDHQNSLELRLASSSSEKPQDADYSTYIPSLSYELEGLILSRFPRSDYWKLSFVNKRFASLVKTGELFKIRRTIGFNEPSVLMLASGENCWWGFDQGFSSRRRLPVLPSDICFASGDKESLCAGTHLLVSGREIEGLMIWRYELSMNKWYKGPSMIYPRCLFASATCGNSAYVAGGIAVIGGGMSGTQIVHNTVEKYDPETRSWTPLPRMYRPRKLCSGCYMDDRFYVIGGRNANEEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G511110
TK1151 IDTkA02G511110
OH-1004 IDLXL04_013218
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G511110
LocationChr02:131240280-131241488 (+)
DescriptionSimilar to At3g27150: F-box/kelch-repeat protein At3g27150
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g27150 F-box/kelch-repeat protein At3g27150. No verified direct reference in this release
At1g26930 F-box/kelch-repeat protein At1g26930. No verified direct reference in this release
At2g02870 Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins. No verified direct reference in this release
At5g60570 F-box/kelch-repeat protein At5g60570. No verified direct reference in this release
At5g39560 F-box/kelch-repeat protein At5g39560. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013218 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT1G26930
ath:AT1G74510
ath:AT2G02870
ath:AT3G27150
ath:AT5G60570
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.535
Rank 1 · TkA02G511110 · TK1151
Cytoplasm0.421
Rank 2 · TkA02G511110 · TK1151
Cell membrane0.109
Rank 3 · TkA02G511110 · TK1151
Endoplasmic reticulum0.050
Rank 4 · TkA02G511110 · TK1151
Plastid0.030
Rank 5 · TkA02G511110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646F-box51-89 aa
PF13964Beta-prop_Calicin146-362 aa
PF01344Kelch_1161-177 aa
PF07646Kelch_2161-177 aa
PF13415Beta-prop_FBX42161-259 aa
PF24681Kelch_KLHDC2_KLHL20_DRC7162-302 aa
PF25210Kelch_FKB95166-354 aa
PF01344Kelch_1180-232 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G511110PF00646F-box51897.4e-0523.2
TkA02G511110PF13964Beta-prop_Calicin1463621.9e-1247.5
TkA02G511110PF01344Kelch_11611774.9e-2381.0
TkA02G511110PF07646Kelch_21611771.9e-1556.6
TkA02G511110PF13415Beta-prop_FBX421612593.1e-0730.9
TkA02G511110PF24681Kelch_KLHDC2_KLHL20_DRC71623025.4e-0936.4
TkA02G511110PF25210Kelch_FKB951663545e-1453.3
TkA02G511110PF01344Kelch_11802324.9e-2381.0
TkA02G511110PF07646Kelch_21802321.9e-1556.6
TkA02G511110PF24996NANM1862570.0004819.8
TkA02G511110PF24981Beta-prop_ATRN-LZTR11892742.2e-0731.2
TkA02G511110PF01344Kelch_12352794.9e-2381.0
TkA02G511110PF07646Kelch_22422791.9e-1556.6
TkA02G511110PF13415Beta-prop_FBX422663013.1e-0730.9
TkA02G511110PF07646Kelch_22893041.9e-1556.6
TkA02G511110PF01344Kelch_12943024.9e-2381.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LI89Arabidopsis thalianasp|Q9LI89|FBK70_ARATH F-box/kelch-repeat protein At3g2715051.600%Swiss-ProtHigh
Q84M94Arabidopsis thalianasp|Q84M94|FBK15_ARATH F-box/kelch-repeat protein At1g2693037.200%Swiss-ProtMedium
Q8L736Arabidopsis thalianasp|Q8L736|SKI11_ARATH F-box/kelch-repeat protein SKIP1137.000%Swiss-ProtMedium
Q9FKJ0Arabidopsis thalianasp|Q9FKJ0|FK132_ARATH F-box/kelch-repeat protein At5g6057030.300%Swiss-ProtMedium
Q6NL02Arabidopsis thalianasp|Q6NL02|FK131_ARATH F-box/kelch-repeat protein At5g3956024.700%Swiss-ProtLow

JBrowse

View in Genome Browser