TkA02G505890 | RubberDandelionOmics

Gene overview

TkA02G505890

Reference: TK1151 Chr: Chr02 Coordinates: 129797192-129798583 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1119 bp · TkA02G505890|TK1151|cDNA

ATGTATCTTAACAACAAGGATCTATCCTGGATCCAAAGACTTAAGATTTGCATTGGGGCGGCTCGTGGGCTAGCATTCCTTCACAATCCTAGTGGGACCCAACAAAGAGTGCTGCATCGCGATATAAAGAGCTCCAACATCCTATTAGATGAAAACTGGAATGCCAAAATCTCAGATATGGGTCTATCCAAATTCGGTCCAGCCAACCAAATATACACATTTCTAGTCTCAAACACTGTTGGCACAATCGGGTATATTGA...

CDS

Download CDS FASTA

1119 bp · TkA02G505890|TK1151|CDS

ATGTATCTTAACAACAAGGATCTATCCTGGATCCAAAGACTTAAGATTTGCATTGGGGCGGCTCGTGGGCTAGCATTCCTTCACAATCCTAGTGGGACCCAACAAAGAGTGCTGCATCGCGATATAAAGAGCTCCAACATCCTATTAGATGAAAACTGGAATGCCAAAATCTCAGATATGGGTCTATCCAAATTCGGTCCAGCCAACCAAATATACACATTTCTAGTCTCAAACACTGTTGGCACAATCGGGTATATTGA...

Protein

Download Protein FASTA

372 aa · TkA02G505890|TK1151|PROTEIN

MYLNNKDLSWIQRLKICIGAARGLAFLHNPSGTQQRVLHRDIKSSNILLDENWNAKISDMGLSKFGPANQIYTFLVSNTVGTIGYIDPVYVETGLLTKESDVYSLGVVLFEVLCGRLCICNMDGNHQSLIGLVWRYYAQNKISEIIFESIKDEINRESLHMFTTIAYQCLKRDVEERPLMADVVKKLEKVLEHEELQQVVDELLKAEIARITDKGGLVDFEGTQSSECLGRFVELRGLLILDEWLQEFHKGKTIGDGSSK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G505890`
TK1151 ID	TkA02G505890
OH-1004 ID	LXL04_013314
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	86.300
Protein coverage (%)	TK1151 100.000 / OH-1004 74.055 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G505890

Location Chr02:129797192-129798583 (+)

Description Similar to At5g39000: Putative receptor-like protein kinase At5g39000

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At5g38990`	Probable receptor-like protein kinase At5g38990.	No verified direct reference in this release
`At2g23200`	Probable receptor-like protein kinase At2g23200.	No verified direct reference in this release
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At1g24030`	May be involved in plant defense signaling.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013314 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009741 response to brassinosteroid Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009536 plastid Cellular Component

GO:0043680 filiform apparatus Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G30570

ath:AT3G46290

ath:AT5G38990

ath:AT5G39000

ath:AT5G59700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.524

Rank 1 · TkA02G505890 · TK1151

Nucleus0.357

Rank 2 · TkA02G505890 · TK1151

Cell membrane0.197

Rank 3 · TkA02G505890 · TK1151

Endoplasmic reticulum0.062

Rank 4 · TkA02G505890 · TK1151

Golgi apparatus0.055

Rank 5 · TkA02G505890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr5-187 aa

PF00069Pkinase15-185 aa

PF04286DUF445134-214 aa

PF08711Med26182-205 aa

PF08711Med26273-322 aa

PF16186Arm_3297-318 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G505890	`PF07714`	PK_Tyr_Ser-Thr	5	187	2.1e-20	73.9
TkA02G505890	`PF00069`	Pkinase	15	185	2.9e-23	83.3
TkA02G505890	`PF04286`	DUF445	134	214	0.067	13.8
TkA02G505890	`PF08711`	Med26	182	205	4.9e-15	55.8
TkA02G505890	`PF08711`	Med26	273	322	4.9e-15	55.8
TkA02G505890	`PF16186`	Arm_3	297	318	0.055	13.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FID8`	Arabidopsis thaliana	sp\|Q9FID8\|Y5900_ARATH Putative receptor-like protein kinase At5g39000	40.200%	Swiss-Prot	Medium
`Q9FID9`	Arabidopsis thaliana	sp\|Q9FID9\|Y5389_ARATH Probable receptor-like protein kinase At5g38990	39.700%	Swiss-Prot	Medium
`O22187`	Arabidopsis thaliana	sp\|O22187\|Y2232_ARATH Probable receptor-like protein kinase At2g23200	46.600%	Swiss-Prot	Medium
`Q3E8W4`	Arabidopsis thaliana	sp\|Q3E8W4\|ANX2_ARATH Receptor-like protein kinase ANXUR2	44.200%	Swiss-Prot	Medium
`Q84M95`	Arabidopsis thaliana	sp\|Q84M95\|PBL28_ARATH Probable serine/threonine-protein kinase PBL28	40.100%	Swiss-Prot	Medium

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