TkA02G455650 | RubberDandelionOmics

Gene overview

TkA02G455650

Reference: TK1151 Chr: Chr02 Coordinates: 116042473-116043558 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

963 bp · TkA02G455650|TK1151|cDNA

ATGTTGTCTCACAACATAGGATCAAAACAGGCTGTCAAAGATGAAAGTCCAAGTACGGGTGGTGGTGGTGGTGGAAGGAAACCATTGAGGCCACCAGACAAAACTCTCAAGTGCCCAAGATGTGATTCGCCCAACACAAAGTTCTGTTATTACAACAACTATAACCTTGCTCAGCCCAGACACTTCTGCAAGGCGTGCAGAAGATACTGGACTAAGGGCGGGGCTCTTCGCAACGTGCCCATAGGGGGCACTTGCAGGAA...

CDS

Download CDS FASTA

963 bp · TkA02G455650|TK1151|CDS

ATGTTGTCTCACAACATAGGATCAAAACAGGCTGTCAAAGATGAAAGTCCAAGTACGGGTGGTGGTGGTGGTGGAAGGAAACCATTGAGGCCACCAGACAAAACTCTCAAGTGCCCAAGATGTGATTCGCCCAACACAAAGTTCTGTTATTACAACAACTATAACCTTGCTCAGCCCAGACACTTCTGCAAGGCGTGCAGAAGATACTGGACTAAGGGCGGGGCTCTTCGCAACGTGCCCATAGGGGGCACTTGCAGGAA...

Protein

Download Protein FASTA

320 aa · TkA02G455650|TK1151|PROTEIN

MLSHNIGSKQAVKDESPSTGGGGGGRKPLRPPDKTLKCPRCDSPNTKFCYYNNYNLAQPRHFCKACRRYWTKGGALRNVPIGGTCRKNKKTKSCSSRFFIGESSSKGSSSDIGDSQIGGLNFPPRILTTNHFSSSYGDTLSNNIAMKQGDHHQQQKHNPNEGGLASFHEIMGTRNNNLHNNTDLASSIESLSSINQDLHWKLQQQRLATLLGGDGGCGSGGGREDDQQQQKKQDFLEPHNEPAQSSMDGDSRRDAGGGNG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G455650`
TK1151 ID	TkA02G455650
OH-1004 ID	LXL04_014021
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	88.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G455650

Location Chr02:116042473-116043558 (+)

Description Similar to DOF5.7: Dof zinc finger protein DOF5.7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65590`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At4g38000`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	Overexpression of AtDOF4.7, an Arabidopsis DOF family transcription factor, induces floral organ abscission deficiency in Arabidopsis.2010 · DOI: 10.1104/pp.110.153247
`At2g28810`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release
`At5g60200`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity).	Mobile PEAR transcription factors integrate positional cues to prime cambial growth.2019 · DOI: 10.1038/s41586-018-0839-y
`At1g51700`	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014021 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0010052 guard cell differentiation Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0010118 stomatal movement Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048364 root development Biological Process

GO:0090057 root radial pattern formation Biological Process

GO:1902066 regulation of cell wall pectin metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G51700

ath:AT2G28810

ath:AT5G60200

ath:AT5G65590

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.970

Rank 1 · TkA02G455650 · TK1151

Cytoplasm0.083

Rank 2 · TkA02G455650 · TK1151

Cell membrane0.029

Rank 3 · TkA02G455650 · TK1151

Endoplasmic reticulum0.021

Rank 4 · TkA02G455650 · TK1151

Plastid0.012

Rank 5 · TkA02G455650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23451Zn_ribbon_PaaD32-67 aa

PF02701Zn_ribbon_Dof33-90 aa

PF10122Zn_ribbon_Com35-42 aa

PF10122Zn_ribbon_Com63-81 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G455650	`PF23451`	Zn_ribbon_PaaD	32	67	0.0069	16.7
TkA02G455650	`PF02701`	Zn_ribbon_Dof	33	90	1.9e-33	115.1
TkA02G455650	`PF10122`	Zn_ribbon_Com	35	42	0.91	9.7
TkA02G455650	`PF10122`	Zn_ribbon_Com	63	81	0.91	9.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LSL6`	Arabidopsis thaliana	sp\|Q9LSL6\|DOF57_ARATH Dof zinc finger protein DOF5.7	33.700%	Swiss-Prot	Medium
`Q84K52`	Arabidopsis thaliana	sp\|Q84K52\|DOF47_ARATH Dof zinc finger protein DOF4.7	46.300%	Swiss-Prot	Medium
`Q9ZV33`	Arabidopsis thaliana	sp\|Q9ZV33\|DOF22_ARATH Dof zinc finger protein DOF2.2	61.500%	Swiss-Prot	Low
`Q84TE9`	Arabidopsis thaliana	sp\|Q84TE9\|DOF53_ARATH Dof zinc finger protein DOF5.3	70.600%	Swiss-Prot	Low
`O82155`	Arabidopsis thaliana	sp\|O82155\|DOF17_ARATH Dof zinc finger protein DOF1.7	77.800%	Swiss-Prot	Low

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