TkA02G452060 | RubberDandelionOmics

Gene overview

TkA02G452060

Reference: TK1151 Chr: Chr02 Coordinates: 115054208-115063054 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1414 bp · TkA02G452060|TK1151|cDNA

AACGATTATTTCATTCTATGTTTTTTATTACATAATATGTTTAGATAGTGGTTTCAAATCGATAATCAATAATATCCTAAAACATACGATGCGTCTCACCTAACCCAAACCTCAATTCTAAAGTTCAAGCATGTCGAGTCCTGCTCATCGGATATTCCAAGGCGCCAAGCCACCAACTGTTGGCATTATCGCCGCTCTGTAAGTTTGTCTTCAATCTCTGCAATTTGTTCGAAAATCTCCCCAAACATTTTGATCACTCG...

CDS

Download CDS FASTA

909 bp · TkA02G452060|TK1151|CDS

ATGTCAATTACATTTCAAAACCTCGTTACCCGTCATTCACACGCTCGCACCTCCTTCAGATTAAAACCCTCCAATCTTAAGTCCCCTAATCTTGATGTCACAGTTTTTCCGCATTACAAACCCCTAACGACGCGAGTGGTCTTCCCATTGAAGTTACGTTCAATTCATACACACCGTCGTTATTCTATAAGAGCTTTGGATTCAGATGGAGGTTTTGACAAACAGTACATTGTTGCAACTGATACATTCGATGTTGACGC...

Protein

Download Protein FASTA

302 aa · TkA02G452060|TK1151|PROTEIN

MSITFQNLVTRHSHARTSFRLKPSNLKSPNLDVTVFPHYKPLTTRVVFPLKLRSIHTHRRYSIRALDSDGGFDKQYIVATDTFDVDAVLSIAEFFCLASSAVLSIGFVINSTFSTSQKPILEWFGNRVSVWQPLLLVVGIAIGAAIRRRQWMRICLGFSKPGSSGVNLVERIEKVEEDLRNSATIIRVLSRQLEKLGIRFRVTRKSMKEPIAQTAELAQKNSEATRALAMQEDILEKELTEIQKVLLAMQDQQQKQLELI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G452060`
TK1151 ID	TkA02G452060
OH-1004 ID	LXL04_014111
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G452060`
Location	Chr02:115054208-115063054 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_014111` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.945

Rank 1 · TkA02G452060 · TK1151

Nucleus0.056

Rank 2 · TkA02G452060 · TK1151

Mitochondrion0.039

Rank 3 · TkA02G452060 · TK1151

Cytoplasm0.023

Rank 4 · TkA02G452060 · TK1151

Cell membrane0.011

Rank 5 · TkA02G452060 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30508DUF862085-138 aa

PF17253DUF5320154-194 aa

PF28175T4SS_LegC2C7167-258 aa

PF31006DYAD_CC167-214 aa

PF15175SPATA24173-255 aa

PF01496V_ATPase_I182-279 aa

PF31006DYAD_CC194-256 aa

PF17253DUF5320208-246 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G452060	`PF30508`	DUF8620	85	138	0.58	11.0
TkA02G452060	`PF17253`	DUF5320	154	194	1.0	11.3
TkA02G452060	`PF28175`	T4SS_LegC2C7	167	258	1.1	8.9
TkA02G452060	`PF31006`	DYAD_CC	167	214	5.0	8.2
TkA02G452060	`PF15175`	SPATA24	173	255	0.082	13.4
TkA02G452060	`PF01496`	V_ATPase_I	182	279	0.47	9.1
TkA02G452060	`PF31006`	DYAD_CC	194	256	5.0	8.2
TkA02G452060	`PF17253`	DUF5320	208	246	1.0	11.3
TkA02G452060	`PF30508`	DUF8620	219	237	0.58	11.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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