TkA02G413160 | RubberDandelionOmics

Gene overview

TkA02G413160

Reference: TK1151 Chr: Chr02 Coordinates: 105063810-105065492 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1452 bp · TkA02G413160|TK1151|cDNA

ATGAACGACCAGTACCAGCCATGCCGGCTGGTGGACACGACAAGAATTGGCGGCACGATTGGGTATTTACCACCGGAGAGCTTCCAGAAGAAAGGCGTCGCCACCGCAAAATCTGATGTTTTCAGTTTCGGCGTTGTTTTGCTTGAAATTGCTTCAGGAAGGAGGTCGGTGGATCTTACACTTCCCGACGACCAAATCATTCTGGTGGACACTGTTAGAAGATTGGCTGACGAAAATCTGATCCTCCAAGCAGCCGACGG...

CDS

Download CDS FASTA

1452 bp · TkA02G413160|TK1151|CDS

ATGAACGACCAGTACCAGCCATGCCGGCTGGTGGACACGACAAGAATTGGCGGCACGATTGGGTATTTACCACCGGAGAGCTTCCAGAAGAAAGGCGTCGCCACCGCAAAATCTGATGTTTTCAGTTTCGGCGTTGTTTTGCTTGAAATTGCTTCAGGAAGGAGGTCGGTGGATCTTACACTTCCCGACGACCAAATCATTCTGGTGGACACTGTTAGAAGATTGGCTGACGAAAATCTGATCCTCCAAGCAGCCGACGG...

Protein

Download Protein FASTA

483 aa · TkA02G413160|TK1151|PROTEIN

MNDQYQPCRLVDTTRIGGTIGYLPPESFQKKGVATAKSDVFSFGVVLLEIASGRRSVDLTLPDDQIILVDTVRRLADENLILQAADGKLPDGSYNIHEMTHLIRLGLLCTLHDPNTRPNMKWIIEALSGGICATLPALPSFKSHPRYISITHSTPTTTATTTSGTTTSTTTFAFASSGSSTTFATARGESLYITAYQEHEHSFDSGDGMISTAQLSRRQLSSFPMVEPPREITYKELLSATDNFSESNRLSEVDFGTAYY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G413160`
TK1151 ID	TkA02G413160
OH-1004 ID	LXL04_014558
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	86.300
Protein coverage (%)	TK1151 100.000 / OH-1004 67.308 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G413160

Location Chr02:105063810-105065492 (+)

Description Similar to LECRKS2: Receptor like protein kinase S.2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g32800`	Receptor like protein kinase S.2.	No verified direct reference in this release
`At5g59260`	Probable L-type lectin-domain containing receptor kinase II.1.	No verified direct reference in this release
`At3g55550`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae.	No verified direct reference in this release
`At5g59270`	Putative L-type lectin-domain containing receptor kinase II.2.	No verified direct reference in this release
`At4g02420`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014558 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0009555 pollen development Biological Process

GO:0009611 response to wounding Biological Process

GO:0009617 response to bacterium Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0071395 cellular response to jasmonic acid stimulus Biological Process

GO:0071446 cellular response to salicylic acid stimulus Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G32800

ath:AT3G53810

ath:AT5G59260

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.630

Rank 1 · TkA02G413160 · TK1151

Cytoplasm0.274

Rank 2 · TkA02G413160 · TK1151

Nucleus0.230

Rank 3 · TkA02G413160 · TK1151

Endoplasmic reticulum0.039

Rank 4 · TkA02G413160 · TK1151

Golgi apparatus0.029

Rank 5 · TkA02G413160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase13-58 aa

PF07714PK_Tyr_Ser-Thr19-127 aa

PF21378YceM-like_C53-88 aa

PF07714PK_Tyr_Ser-Thr269-328 aa

PF00069Pkinase269-329 aa

PF00069Pkinase339-441 aa

PF07714PK_Tyr_Ser-Thr341-443 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G413160	`PF00069`	Pkinase	13	58	7.4e-18	65.6
TkA02G413160	`PF07714`	PK_Tyr_Ser-Thr	19	127	4.6e-22	79.3
TkA02G413160	`PF21378`	YceM-like_C	53	88	0.014	16.4
TkA02G413160	`PF07714`	PK_Tyr_Ser-Thr	269	328	4.6e-22	79.3
TkA02G413160	`PF00069`	Pkinase	269	329	7.4e-18	65.6
TkA02G413160	`PF00069`	Pkinase	339	441	7.4e-18	65.6
TkA02G413160	`PF07714`	PK_Tyr_Ser-Thr	341	443	4.6e-22	79.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O48837`	Arabidopsis thaliana	sp\|O48837\|LRKS2_ARATH Receptor like protein kinase S.2	47.500%	Swiss-Prot	Medium
`Q9FIF1`	Arabidopsis thaliana	sp\|Q9FIF1\|LRK21_ARATH Probable L-type lectin-domain containing receptor kinase II.1	31.800%	Swiss-Prot	Low
`Q9M2S4`	Arabidopsis thaliana	sp\|Q9M2S4\|LRKS4_ARATH L-type lectin-domain containing receptor kinase S.4	30.800%	Swiss-Prot	Low
`Q9FIF0`	Arabidopsis thaliana	sp\|Q9FIF0\|LRK22_ARATH Putative L-type lectin-domain containing receptor kinase II.2	31.500%	Swiss-Prot	Low
`O81291`	Arabidopsis thaliana	sp\|O81291\|LRK44_ARATH L-type lectin-domain containing receptor kinase IV.4	32.000%	Swiss-Prot	Low

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