TkA02G385780 | RubberDandelionOmics

Gene overview

TkA02G385780

Reference: TK1151 Chr: Chr02 Coordinates: 98042900-98043649 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

456 bp · TkA02G385780|TK1151|cDNA

TGTTTCCAGTTAAAGGCGAAAAAATCAACACCTAGCAAGAAAGTTTCAAAATCTTCACGACACTTGGATTTTGTTCACGATGATGATGATGATGCTTTAATGAAGGCCATTGCTCTTTCTCTACAAGATTCACCAGGCTTTTTGGATGTAATGACCAAAACTCCCCCTAAAAAGTCAGAGGCAAATGCGTCAGTTGTTGAAAACACTGAAAGTAAGCAGATTGTACATAAAGATGATTCTGGAAACTGGAAGAGAAAAAA...

CDS

Download CDS FASTA

456 bp · TkA02G385780|TK1151|CDS

TGTTTCCAGTTAAAGGCGAAAAAATCAACACCTAGCAAGAAAGTTTCAAAATCTTCACGACACTTGGATTTTGTTCACGATGATGATGATGATGCTTTAATGAAGGCCATTGCTCTTTCTCTACAAGATTCACCAGGCTTTTTGGATGTAATGACCAAAACTCCCCCTAAAAAGTCAGAGGCAAATGCGTCAGTTGTTGAAAACACTGAAAGTAAGCAGATTGTACATAAAGATGATTCTGGAAACTGGAAGAGAAAAAA...

Protein

Download Protein FASTA

151 aa · TkA02G385780|TK1151|PROTEIN

CFQLKAKKSTPSKKVSKSSRHLDFVHDDDDDALMKAIALSLQDSPGFLDVMTKTPPKKSEANASVVENTESKQIVHKDDSGNWKRKNSFASRVQMTEDELILLFFFSSMWGKGGISLRDLRRVAASHDFTWTDEEMKHMIDFFDTDCRWQG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G385780`
TK1151 ID	TkA02G385780
OH-1004 ID	LXL04_035017
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	80.600
Protein coverage (%)	TK1151 95.364 / OH-1004 77.358 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G385780`
Location	Chr02:98042900-98043649 (+)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_035017` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0000226 microtubule cytoskeleton organization Biological Process GO:0007099 centriole replication Biological Process GO:0034605 cellular response to heat Biological Process GO:0051301 cell division Biological Process GO:0000922 spindle pole Cellular Component GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0005813 centrosome Cellular Component GO:0005814 centriole Cellular Component GO:0005815 microtubule organizing center Cellular Component GO:0005829 cytosol Cellular Component GO:0005929 cilium Cellular Component
KEGG gene cross-reference	mmu:26369 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.449

Rank 1 · TkA02G385780 · TK1151

Nucleus0.417

Rank 2 · TkA02G385780 · TK1151

Cell membrane0.128

Rank 3 · TkA02G385780 · TK1151

Endoplasmic reticulum0.098

Rank 4 · TkA02G385780 · TK1151

Golgi apparatus0.073

Rank 5 · TkA02G385780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21909USP_UIM_N22-45 aa

PF23625UIM_228-44 aa

PF02809UIM28-44 aa

PF10484MRP-S2332-80 aa

PF00235Profilin72-90 aa

PF16872putAbiC76-108 aa

PF13833EF-hand_892-104 aa

PF02809UIM96-100 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G385780	`PF21909`	USP_UIM_N	22	45	0.015	16.1
TkA02G385780	`PF23625`	UIM_2	28	44	0.035	15.0
TkA02G385780	`PF02809`	UIM	28	44	0.079	13.5
TkA02G385780	`PF10484`	MRP-S23	32	80	0.051	14.5
TkA02G385780	`PF00235`	Profilin	72	90	0.28	12.0
TkA02G385780	`PF16872`	putAbiC	76	108	0.12	13.5
TkA02G385780	`PF13833`	EF-hand_8	92	104	0.11	12.9
TkA02G385780	`PF02809`	UIM	96	100	0.079	13.5
TkA02G385780	`PF13833`	EF-hand_8	112	147	0.11	12.9
TkA02G385780	`PF00235`	Profilin	117	145	0.28	12.0
TkA02G385780	`PF23625`	UIM_2	133	138	0.035	15.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser

Gene Card