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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G373370
Reference: TK1151 Chr: Chr02 Coordinates: 95049511-95057723 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4875 bp · TkA02G373370|TK1151|cDNA

CTTCGATATGTGCGATTTGATAAAAGGGGACGAGAATAGGGGGAGAGTGAAAACGAAAAACCCTCCCTCCCTCCAAATTGTAAAATCGAATAAGCCAAATCGAAGTAGACGCATTTGGTCGCCACTGTTTCCTTACAGCTGAGACATACAAACTTGAAGATCGGAGTCGGGGTTCTTATTGCTCGAATATAGAAGTACTTGATTGTAACCCTGGTTTTGAGTTTATCTTTGCTTCGAAATGACGACGTATACGTAAACAG...

CDS

Download CDS FASTA

4260 bp · TkA02G373370|TK1151|CDS

ATGGAGACGGATAAATGCGAAGAGGAAGAAGATATTGGCAGTACATCAAGTGACTCTTTCATCAATGATGATAGTGACAATAATGAACCCTCAACATCTGGTCAGGATGATGAAGTAAATCTTGAGAAACCGTTGACTGATGAAGATATTGAAAGGCTAATATCCGAGCTCTTGACAGCTGAGAGTAAGGCTGCAGAGGCCCAAGAAGCACTTGAAGATGAGTCATTAGCAAAAGTGGAAGTGGAAGTACGAGAAGAGTT...

Protein

Download Protein FASTA

1419 aa · TkA02G373370|TK1151|PROTEIN

METDKCEEEEDIGSTSSDSFINDDSDNNEPSTSGQDDEVNLEKPLTDEDIERLISELLTAESKAAEAQEALEDESLAKVEVEVREELGQSLEGEALENAVADEMVALRDKWEDELDDLETESAHLLEQLDGAGIELPSLYKWIESQAPNGCRTEAWKNRTHWVGSQVTGDATESIADAEKYLQTHRPVKRHHGKLLEEGASGFLQKRLAPEDDKESNKDVNWSSFNELCSSSKNKNSFGSKNWASVYLASTPQQAAELGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G373370
TK1151 IDTkA02G373370
OH-1004 IDLXL04_001628
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)32.100
Protein coverage (%)TK1151 39.887 / OH-1004 55.714
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G373370
LocationChr02:95049511-95057723 (+)
DescriptionSimilar to CHR25: Protein CHROMATIN REMODELING 25
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g08600 Involved in transcriptional regulation and chromatin remodeling. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_001628 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000711 meiotic DNA repair synthesis Biological Process
GO:0000724 double-strand break repair via homologous recombination Biological Process
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006338 chromatin remodeling Biological Process
GO:0007131 reciprocal meiotic recombination Biological Process
GO:0010212 response to ionizing radiation Biological Process
GO:0010332 response to gamma radiation Biological Process
GO:0043150 DNA synthesis involved in double-strand break repair via homologous recombination Biological Process
GO:0045003 double-strand break repair via synthesis-dependent strand annealing Biological Process
GO:0051301 cell division Biological Process
GO:0051321 meiotic cell cycle Biological Process
KEGG gene cross-reference
ath:AT3G19210
dosa:Os02g0762800
dwi:6642593
gga:424611
hsa:8438
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.935
Rank 1 · TkA02G373370 · TK1151
Cytoplasm0.147
Rank 2 · TkA02G373370 · TK1151
Mitochondrion0.028
Rank 3 · TkA02G373370 · TK1151
Cell membrane0.021
Rank 4 · TkA02G373370 · TK1151
Endoplasmic reticulum0.009
Rank 5 · TkA02G373370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00271Helicase_C254-268 aa
PF00176SNF2-rel_dom290-326 aa
PF04986Y2_Tnp314-339 aa
PF05887Trypan_PARP379-409 aa
PF17981ADD_ATRX427-453 aa
PF17981ADD_ATRX485-491 aa
PF11737DUF3300508-532 aa
PF04851ResIII527-568 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G373370PF00271Helicase_C2542686.2e-1969.0
TkA02G373370PF00176SNF2-rel_dom2903262.8e-55188.2
TkA02G373370PF04986Y2_Tnp3143397.17.3
TkA02G373370PF05887Trypan_PARP3794096.57.5
TkA02G373370PF17981ADD_ATRX4274530.008316.6
TkA02G373370PF17981ADD_ATRX4854910.008316.6
TkA02G373370PF11737DUF33005085320.1712.1
TkA02G373370PF04851ResIII5275682.4e-0834.8
TkA02G373370PF04851ResIII6628512.4e-0834.8
TkA02G373370PF00176SNF2-rel_dom6679862.8e-55188.2
TkA02G373370PF13872AAA_346858540.0001221.8
TkA02G373370PF11737DUF330095510100.1712.1
TkA02G373370PF04986Y2_Tnp9569987.17.3
TkA02G373370PF04851ResIII9589822.4e-0834.8
TkA02G373370PF13307Helicase_C_297110070.0215.7
TkA02G373370PF00271Helicase_C106311906.2e-1969.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4HW51Arabidopsis thalianasp|F4HW51|CHR20_ARATH Protein CHROMATIN REMODELING 2059.000%Swiss-ProtHigh

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