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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G289520
Reference: TK1151 Chr: Chr02 Coordinates: 73977502-73980852 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2636 bp · TkA02G289520|TK1151|cDNA

TACAATTTGGATGTAACTTTCTTAAATAGATTGGACTTAATTTGGCTGGGTACATATTCTGGAATTCATTTGACGGGTGTTGGAATAAAACTTATTTACACTTCAAAAAATATTTACCAAAACGGATGTTTTGAAAAATTAATTTCTAAAAATCACGCTGCTACCGAAGCTTTCTGAGAGGGAGTTTGAGACTTTGAGCGATTATTTGAGTCTCCAGCAGTCCTCCATCTCCGGCCAAGCTTTCTCCACCGCCGACGACG...

CDS

Download CDS FASTA

2025 bp · TkA02G289520|TK1151|CDS

ATGATTCAATGCCTTCAATTCGGAAGAATCTACAATGGACTTTCGCTTCTGAATGATGTGCTGCAATCATCGTATCATAGAAATCGATTCATCTACATTTCCAAGTCGAAATACCCAGATGAAGATTCGAAACCGAGGTCAATTACCTCGAATTCTCCATCGAACAACTCAAATGAATCACAGTGTTTGGTTTTCCGAGCCGTCAACAGGGTGAAATCAATCAGTCATTCCCAAAAGGAGTTTGATGAAGTGAAGTCATT...

Protein

Download Protein FASTA

674 aa · TkA02G289520|TK1151|PROTEIN

MIQCLQFGRIYNGLSLLNDVLQSSYHRNRFIYISKSKYPDEDSKPRSITSNSPSNNSNESQCLVFRAVNRVKSISHSQKEFDEVKSLNKLIVDNIRRGDLKLAYNVFENMSVRTTVTWNSMLAGITRVEDARQLFDKIPKPDIVSYNTMLSCYILNSGIKAAQTFFDQMPFRDTASWNTLVSGFCHIKMMDKAYELFQAMPEKNNISWNVMISGYASIGDMISASKLFHNSPFKCVVTWTAMITGYMKSSQINLAEKLFD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G289520
TK1151 IDTkA02G289520
OH-1004 IDLXL04_020291
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)50.500
Protein coverage (%)TK1151 55.490 / OH-1004 46.402
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G289520
LocationChr02:73977502-73980852 (+)
DescriptionSimilar to PCMP-H24: Pentatricopeptide repeat-containing protein At4g02750
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g16835 Pentatricopeptide repeat-containing protein At4g16835, mitochondrial. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release
At3g49170 May play a role in embryogenesis. No verified direct reference in this release
At1g20230 Pentatricopeptide repeat-containing protein At1g20230. No verified direct reference in this release
At2g03880 Pentatricopeptide repeat-containing protein At2g03880, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020291 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0010214 seed coat development Biological Process
GO:0048731 system development Biological Process
GO:0140547 acquisition of seed longevity Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G09410
ath:AT4G02750
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.641
Rank 1 · TkA02G289520 · TK1151
Plastid0.197
Rank 2 · TkA02G289520 · TK1151
Nucleus0.060
Rank 3 · TkA02G289520 · TK1151
Cytoplasm0.034
Rank 4 · TkA02G289520 · TK1151
Cell membrane0.006
Rank 5 · TkA02G289520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22500GMC_oxred_C_1st86-150 aa
PF24603TPR_3087-115 aa
PF13041PPR_288-111 aa
PF13812PPR_388-110 aa
PF24760TPR_IF140_C90-110 aa
PF01535PPR96-111 aa
PF12854PPR_196-110 aa
PF23276TPR_2496-110 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G289520PF22500GMC_oxred_C_1st861500.0813.6
TkA02G289520PF24603TPR_30871150.04414.9
TkA02G289520PF13041PPR_2881111.1e-63211.9
TkA02G289520PF13812PPR_3881106.6e-2071.7
TkA02G289520PF24760TPR_IF140_C901100.0415.0
TkA02G289520PF01535PPR961118.9e-61198.7
TkA02G289520PF12854PPR_1961105.3e-43145.1
TkA02G289520PF23276TPR_24961105.3e-1040.0
TkA02G289520PF22330Rib_mS39_PPR1001274e-0730.7
TkA02G289520PF17177PPR_long1001311.5e-0525.2
TkA02G289520PF13041PPR_21141371.1e-63211.9
TkA02G289520PF01535PPR1161258.9e-61198.7
TkA02G289520PF24603TPR_301231230.04414.9
TkA02G289520PF12854PPR_11271375.3e-43145.1
TkA02G289520PF22330Rib_mS39_PPR1301514e-0730.7
TkA02G289520PF12854PPR_11401695.3e-43145.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M4P3Arabidopsis thalianasp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835, mitochondrial64.200%Swiss-ProtHigh
Q9SY02Arabidopsis thalianasp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g0275050.500%Swiss-ProtMedium
Q5G1T1Arabidopsis thalianasp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic46.700%Swiss-ProtMedium
Q9LNU6Arabidopsis thalianasp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g2023044.000%Swiss-ProtMedium
Q9SI53Arabidopsis thalianasp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880, mitochondrial47.000%Swiss-ProtMedium

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