TkA02G270730 | RubberDandelionOmics

Gene overview

TkA02G270730

Reference: TK1151 Chr: Chr02 Coordinates: 69125531-69129408 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

594 bp · TkA02G270730|TK1151|cDNA

ATGATTTTTTTCAAAACTACATATGATGCCAGGATGCAGAAAAGTTTCACTGCATTGCAGAAGTGCACATCCGCAATACGCCAACTAGCATACGGAAACACGGCAGACGCACTGGATGAGTACTTGAATATGTCAGAAAGGGTTTCACGAGAAAGTCTATATAACTTCTGTTATGGTATTGTTAAACTGTATGGCGAAGAATATCTGCGCAAGCCAACATCCAATGATATTCAACTTTTGTATGATGCTCATGAGAGAAG...

CDS

Download CDS FASTA

594 bp · TkA02G270730|TK1151|CDS

ATGATTTTTTTCAAAACTACATATGATGCCAGGATGCAGAAAAGTTTCACTGCATTGCAGAAGTGCACATCCGCAATACGCCAACTAGCATACGGAAACACGGCAGACGCACTGGATGAGTACTTGAATATGTCAGAAAGGGTTTCACGAGAAAGTCTATATAACTTCTGTTATGGTATTGTTAAACTGTATGGCGAAGAATATCTGCGCAAGCCAACATCCAATGATATTCAACTTTTGTATGATGCTCATGAGAGAAG...

Protein

Download Protein FASTA

197 aa · TkA02G270730|TK1151|PROTEIN

MIFFKTTYDARMQKSFTALQKCTSAIRQLAYGNTADALDEYLNMSERVSRESLYNFCYGIVKLYGEEYLRKPTSNDIQLLYDAHERRHGFPGLRGQYQTGNHRYPSIMLEAIASQDLWIWHAFFGVVGRNNDLNVLYQSPLFEKIRFKHEQEVTRKDVERDFGVLKSRWAIIRLPARAKSVNKRRGANTGGNLVERE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G270730`
TK1151 ID	TkA02G270730
OH-1004 ID	LXL04_024756
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	45.200
Protein coverage (%)	TK1151 90.355 / OH-1004 27.503 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA02G270730`
Location	Chr02:69125531-69129408 (-)
Description	Similar to Putative AC9 transposase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024756` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006310 DNA recombination Biological Process GO:0006351 DNA-templated transcription Biological Process GO:0009791 post-embryonic development Biological Process GO:0032196 transposition Biological Process GO:0005634 nucleus Cellular Component GO:0005829 cytosol Cellular Component GO:0003677 DNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0046983 protein dimerization activity Molecular Function
KEGG gene cross-reference	ath:AT3G42170 dosa:Os03g0733400 dosa:Os05g0239150 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.870

Rank 1 · TkA02G270730 · TK1151

Cytoplasm0.163

Rank 2 · TkA02G270730 · TK1151

Extracellular0.050

Rank 3 · TkA02G270730 · TK1151

Cell membrane0.019

Rank 4 · TkA02G270730 · TK1151

Mitochondrion0.018

Rank 5 · TkA02G270730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26013DUF800435-58 aa

PF04827Plant_tran93-145 aa

PF13359DDE_Tnp_4100-148 aa

PF26013DUF8004110-159 aa

PF04827Plant_tran147-179 aa

PF13359DDE_Tnp_4155-179 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G270730	`PF26013`	DUF8004	35	58	0.022	15.4
TkA02G270730	`PF04827`	Plant_tran	93	145	7.1e-29	101.6
TkA02G270730	`PF13359`	DDE_Tnp_4	100	148	0.0036	17.7
TkA02G270730	`PF26013`	DUF8004	110	159	0.022	15.4
TkA02G270730	`PF04827`	Plant_tran	147	179	7.1e-29	101.6
TkA02G270730	`PF13359`	DDE_Tnp_4	155	179	0.0036	17.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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