TkA02G075840 | RubberDandelionOmics

Gene overview

TkA02G075840

Reference: TK1151 Chr: Chr02 Coordinates: 19609786-19611863 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

772 bp · TkA02G075840|TK1151|cDNA

GAAAGACTTTGGCTGCTCCGCTGCTCCACAGCAAACAATTCATATACAGAATCTCGGTACCTACTTTTTCACGCCTCATTAGATTTCTCACTGGTTGTAGTTGGTGGCGGCAGATCGAAAATGGGTTCAGAGGCGAAAGTTCTTTCACTTGAAGAGGTTTCAAAACACGATACAAAAGATGATTGCTGGCTTATTATTTCAGGAAAGGTGTACGACATCACACCGTTTCTAGATGATCATCCTGGAGGTGATGAAGTCCT...

CDS

Download CDS FASTA

492 bp · TkA02G075840|TK1151|CDS

GAAAGACTTTGGCTGCTCCGCTGCTCCACAGCAAACAATTCATATACAGAATCTCGGTACCTACTTTTTCACGCCTCATTAGATTTCTCACTGGTTGTAGTTGGTGGCGGCAGATCGAAAATGGGTTCAGAGGCGAAAGTTCTTTCACTTGAAGAGGTTTCAAAACACGATACAAAAGATGATTGCTGGCTTATTATTTCAGGAAAGGTGTACGACATCACACCGTTTCTAGATGATCATCCTGGAGGTGATGAAGTCCT...

Protein

Download Protein FASTA

163 aa · TkA02G075840|TK1151|PROTEIN

ERLWLLRCSTANNSYTESRYLLFHASLDFSLVVVGGGRSKMGSEAKVLSLEEVSKHDTKDDCWLIISGKVYDITPFLDDHPGGDEVLVLATKKDATEDFEDVGHSQNARDMLKDYYVGEIDVDSMPQKGQYKSPSSAGSDSKQASGGGVHPTPLQCWFYLYSS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G075840`
TK1151 ID	TkA02G075840
OH-1004 ID	LXL04_022542
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 88.344 / OH-1004 72.362 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G075840

Location Chr02:19609786-19611863 (-)

Description Similar to CYTB5-E: Cytochrome b5 isoform E

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g53560`	Membrane bound hemoprotein which function as an electron carrier for several membrane bound oxygenases, including fatty acid desaturases.	No verified direct reference in this release
`At2g32720`	Membrane bound hemoprotein which function as an electron carrier for several membrane bound oxygenases, including fatty acid desaturases.	No verified direct reference in this release
`At5g48810`	Membrane bound hemoprotein which function as an electron carrier for several membrane bound oxygenases, including fatty acid desaturases.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022542 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000325 plant-type vacuole Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

GO:0020037 heme binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT5G48810

ath:AT5G53560

nta:107781159

nta:107812972

nta:107816859

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.415

Rank 1 · TkA02G075840 · TK1151

Nucleus0.297

Rank 2 · TkA02G075840 · TK1151

Endoplasmic reticulum0.150

Rank 3 · TkA02G075840 · TK1151

Mitochondrion0.138

Rank 4 · TkA02G075840 · TK1151

Cell membrane0.107

Rank 5 · TkA02G075840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00173Cyt-b549-120 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G075840	`PF00173`	Cyt-b5	49	120	2e-28	98.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q42342`	Arabidopsis thaliana	sp\|Q42342\|CYB5E_ARATH Cytochrome b5 isoform E	67.000%	Swiss-Prot	Medium
`O48845`	Arabidopsis thaliana	sp\|O48845\|CYB5B_ARATH Cytochrome b5 isoform B	59.600%	Swiss-Prot	High
`Q9ZWT2`	Arabidopsis thaliana	sp\|Q9ZWT2\|CYB5D_ARATH Cytochrome B5 isoform D	58.300%	Swiss-Prot	High

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