TkA01G627810 | RubberDandelionOmics

Gene overview

TkA01G627810

Reference: TK1151 Chr: Chr01 Coordinates: 158503965-158506799 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1379 bp · TkA01G627810|TK1151|cDNA

TTACAGACATCTCCTCTATAGGATTCTTCTTCTCAGACAACCATCACACCTTCAAATCATTCCTCTTCTCTCTCTCTACAGACCACAACCATGTGGAACACTTTACCATTTTTTGACTCACTAGTACTCCATTCATCACTCTTCTCTTTCATGATCTTCGTTTTCCTGAAGAATTAAGCTTATCTTGTTAGATGATCGTGCGTGTGAACATATAATTATCAGAATGACGAAGGTAAGCCCGGAAGTTTACGAAGAGACGC...

CDS

Download CDS FASTA

510 bp · TkA01G627810|TK1151|CDS

ATGGAGGAAATGGTGGAAGAAATCCAGCAGGCTAGAAGAATTAGATTAATGCATCAACCCTGCAAGGTGATGGACATGGAACATGAGCTTCTAGCCTTAAGGCTACAAATCCAAGAGAAGTCTGCCTTCTCAGTAAAACTTCAGCAAGAGTTACTTCTGAAGAAACTGTCTGAAGAGAATAAGTTAAGTTTATATTCATTAGGAGATTGTGGAAATTTGGGGTCAATTTTACGACTTCAGCCCTCCTCAGAAGAAGCCAT...

Protein

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169 aa · TkA01G627810|TK1151|PROTEIN

MEEMVEEIQQARRIRLMHQPCKVMDMEHELLALRLQIQEKSAFSVKLQQELLLKKLSEENKLSLYSLGDCGNLGSILRLQPSSEEAMELSKCSIQWYRLSSQCSRRELISGANKSVYAPEPFDVGRILQVDIISNGQKSTVTTTSPIQPGLFFYFLSLLYFIFISLKKM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G627810`
TK1151 ID	TkA01G627810
OH-1004 ID	LXL04_000211
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.700
Protein coverage (%)	TK1151 89.349 / OH-1004 30.382 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G627810

Location Chr01:158503965-158506799 (-)

Description Similar to SCAB2: Stomatal closure-related actin-binding protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g40820`	Probable plant-specific actin binding protein that bundles and stabilizes microfilaments (MFs).	No verified direct reference in this release
`At2g26770`	Plant-specific actin binding protein that bundles and stabilizes microfilaments (MFs).	The plant-specific actin binding protein SCAB1 stabilizes actin filaments and regulates stomatal movement in Arabidopsis.2011 · DOI: 10.1105/tpc.111.086546
`At3g56480`	Probable plant-specific actin binding protein that bundles and stabilizes microfilaments (MFs).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000211 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007015 actin filament organization Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0003779 actin binding Molecular Function

KEGG gene cross-reference

ath:AT2G26770

ath:AT2G40820

ath:AT3G56480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.496

Rank 1 · TkA01G627810 · TK1151

Nucleus0.483

Rank 2 · TkA01G627810 · TK1151

Mitochondrion0.080

Rank 3 · TkA01G627810 · TK1151

Cell membrane0.062

Rank 4 · TkA01G627810 · TK1151

Endoplasmic reticulum0.056

Rank 5 · TkA01G627810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16712SCAB_CC1-51 aa

PF24696UGSC21-71 aa

PF16709SCAB-Ig68-149 aa

PF23197IG_AIR991-131 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G627810	`PF16712`	SCAB_CC	1	51	8.6e-16	58.9
TkA01G627810	`PF24696`	UGSC	21	71	0.29	11.9
TkA01G627810	`PF16709`	SCAB-Ig	68	149	8.4e-38	129.1
TkA01G627810	`PF23197`	IG_AIR9	91	131	0.0037	17.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4IIZ9`	Arabidopsis thaliana	sp\|F4IIZ9\|SCAB2_ARATH Stomatal closure-related actin-binding protein 2	59.600%	Swiss-Prot	High
`O48791`	Arabidopsis thaliana	sp\|O48791\|SCAB1_ARATH Stomatal closure-related actin-binding protein 1	53.300%	Swiss-Prot	High
`Q8GX05`	Arabidopsis thaliana	sp\|Q8GX05\|SCAB3_ARATH Stomatal closure-related actin-binding protein 3	56.400%	Swiss-Prot	High

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