RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G612730
Reference: TK1151 Chr: Chr01 Coordinates: 154450817-154453958 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1994 bp · TkA01G612730|TK1151|cDNA

ATAGAGACGTCGACGTGTTTCCTCTCTCCTATCTTCAAATCCGAAATCATCTACAAGCTTTCACTCAGCCCTCGGGCCATCAATATCTTGACCAAAAGAGTTTTGACCAAGATGACACCTGTTGGCCCTTTTGTCAAAGCTGCTAGACCAGATGATGGATCTTCAAAAAAACTTAATGAAACCCAAAGCAAGCATCAAGGATGCCCAATGAGCAATAAAGAAACCCTAAATAAACAACAAGGATGCCCAATGAGCAAGGA...

CDS

Download CDS FASTA

1278 bp · TkA01G612730|TK1151|CDS

ATAGAGACGTCGACGTGTTTCCTCTCTCCTATCTTCAAATCCGAAATCATCTACAAGCTTTCACTCAGCCCTCGGGCCATCAATATCTTGACCAAAAGAGTTTTGACCAAGATGACACCTGTTGGCCCTTTTGTCAAAGCTGCTAGACCAGATGATGGATCTTCAAAAAAACTTAATGAAACCCAAAGCAAGCATCAAGGATGCCCAATGAGCAATAAAGAAACCCTAAATAAACAACAAGGATGCCCAATGAGCAAGGA...

Protein

Download Protein FASTA

425 aa · TkA01G612730|TK1151|PROTEIN

IETSTCFLSPIFKSEIIYKLSLSPRAINILTKRVLTKMTPVGPFVKAARPDDGSSKKLNETQSKHQGCPMSNKETLNKQQGCPMSKENQSKQQGCPMSKVNQESKDSNVIPAKCPFGYDSQTFKIGPFSCIICQALLFESTRCVPCTHVFCKACISRFNDCPLCGADIEKTESDTNLQSVVDRFIDGHARIKRSPVDKDEKEVIDEKKNTVIYEDVSLERGAFLVQQAMRAFRANNVESAKSRLSLCAQDIREQLEIAGN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G612730
TK1151 IDTkA01G612730
OH-1004 IDLXL04_000426
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)86.200
Protein coverage (%)TK1151 100.000 / OH-1004 93.881
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G612730
LocationChr01:154450817-154453958 (+)
DescriptionSimilar to NCA1: Protein NCA1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g54360 Has holdase chaperone activity that may fold catalase to a functional structure.
Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis.2013 · DOI: 10.1105/tpc.113.117192
A chaperone function of NO CATALASE ACTIVITY1 is required to maintain catalase activity and for multiple stress responses in Arabidopsis.2015 · DOI: 10.1105/tpc.114.135095

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000426 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0043069 negative regulation of programmed cell death Biological Process
GO:0044818 mitotic G2/M transition checkpoint Biological Process
GO:0045814 negative regulation of gene expression, epigenetic Biological Process
GO:0051301 cell division Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0031519 PcG protein complex Cellular Component
GO:0035102 PRC1 complex Cellular Component
KEGG gene cross-reference
ath:AT3G54360
dre:394249
xla:734287
xtr:395009
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.598
Rank 1 · TkA01G612730 · TK1151
Nucleus0.326
Rank 2 · TkA01G612730 · TK1151
Mitochondrion0.113
Rank 3 · TkA01G612730 · TK1151
Cell membrane0.078
Rank 4 · TkA01G612730 · TK1151
Peroxisome0.072
Rank 5 · TkA01G612730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01265Cyto_heme_lyase55-105 aa
PF13923zf-C3HC4_261-84 aa
PF14447Prok-RING_463-74 aa
PF00097zf-C3HC464-84 aa
PF13639zf-RING_274-83 aa
PF13920zf-C3HC4_376-84 aa
PF14447Prok-RING_478-88 aa
PF14447Prok-RING_490-99 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G612730PF01265Cyto_heme_lyase551050.2111.8
TkA01G612730PF13923zf-C3HC4_261849.5e-0522.8
TkA01G612730PF14447Prok-RING_463740.02315.3
TkA01G612730PF00097zf-C3HC464840.01515.9
TkA01G612730PF13639zf-RING_274830.003218.4
TkA01G612730PF13920zf-C3HC4_376843.3e-0627.5
TkA01G612730PF14447Prok-RING_478880.02315.3
TkA01G612730PF14447Prok-RING_490990.02315.3
TkA01G612730PF13920zf-C3HC4_31291703.3e-0627.5
TkA01G612730PF13639zf-RING_21291640.003218.4
TkA01G612730PF16685zf-RING_101291780.1612.8
TkA01G612730PF13923zf-C3HC4_21301649.5e-0522.8
TkA01G612730PF00097zf-C3HC41301640.01515.9
TkA01G612730PF14447Prok-RING_41301710.02315.3
TkA01G612730PF14634zf-RING_51301650.03714.7
TkA01G612730PF13445zf-RING_UBOX1301550.03814.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M2V1Arabidopsis thalianasp|Q9M2V1|NCA1_ARATH Protein NCA163.200%Swiss-ProtHigh

JBrowse

View in Genome Browser