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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G594800
Reference: TK1151 Chr: Chr01 Coordinates: 149770731-149771720 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

735 bp · TkA01G594800|TK1151|cDNA

ATGGAAGGCAAAAATCACATTCCATCAAGCACATTAACTCCAAGGCAAAACCTTAAACCCCTAATCGACTTCATACCACCAGCTCATTACGTCATAGGAGATCACCGTACAGCCGTCCAGCACCCAGAGATGCAATCAATTCTCATTGACAATCAACGCTTGGCGACGCTTCATGAATTTGTCAATGTGGAACTCTCCGCCGCCCAAAACGACCTCCGCCACCTTTCCTCCGTTGCCGACAGAGTCAAGGCCGAGAGAGA...

CDS

Download CDS FASTA

735 bp · TkA01G594800|TK1151|CDS

ATGGAAGGCAAAAATCACATTCCATCAAGCACATTAACTCCAAGGCAAAACCTTAAACCCCTAATCGACTTCATACCACCAGCTCATTACGTCATAGGAGATCACCGTACAGCCGTCCAGCACCCAGAGATGCAATCAATTCTCATTGACAATCAACGCTTGGCGACGCTTCATGAATTTGTCAATGTGGAACTCTCCGCCGCCCAAAACGACCTCCGCCACCTTTCCTCCGTTGCCGACAGAGTCAAGGCCGAGAGAGA...

Protein

Download Protein FASTA

244 aa · TkA01G594800|TK1151|PROTEIN

MEGKNHIPSSTLTPRQNLKPLIDFIPPAHYVIGDHRTAVQHPEMQSILIDNQRLATLHEFVNVELSAAQNDLRHLSSVADRVKAERDAEVREVYDMAAKMEAEVRSVDEANAEMAQVLGDLQKLRSEKKELDEKLNKLCGDVEKVSLEYHRIPLIKSEIETMQKKIRRGREVIEHEKRVYASNFKQQEAMENCRMFMAREIEKLKVEVNDAVKRARAAAAVEAASIPGNLLFFASIYLTFIVNK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G594800
TK1151 IDTkA01G594800
OH-1004 IDLXL04_000670
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 93.852 / OH-1004 80.070
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G594800
LocationChr01:149770731-149771720 (+)
DescriptionSimilar to FLXL1: Protein FLX-like 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000670 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0009908 flower development Biological Process
GO:0030154 cell differentiation Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016604 nuclear body Cellular Component
KEGG gene cross-reference
ath:AT1G55170
ath:AT1G67170
ath:AT2G30120
ath:AT3G14750
ath:AT5G61920
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.582
Rank 1 · TkA01G594800 · TK1151
Nucleus0.329
Rank 2 · TkA01G594800 · TK1151
Cell membrane0.133
Rank 3 · TkA01G594800 · TK1151
Endoplasmic reticulum0.057
Rank 4 · TkA01G594800 · TK1151
Plastid0.049
Rank 5 · TkA01G594800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13844Glyco_transf_4127-116 aa
PF04871Uso1_p115_C44-143 aa
PF13166AAA_1349-218 aa
PF30150YGR130C_N51-136 aa
PF11563Protoglobin51-109 aa
PF05615THOC753-138 aa
PF10046BLOC1_254-138 aa
PF00038Filament55-202 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G594800PF13844Glyco_transf_41271160.09411.7
TkA01G594800PF04871Uso1_p115_C441430.7710.8
TkA01G594800PF13166AAA_13492180.1111.8
TkA01G594800PF30150YGR130C_N511360.01315.8
TkA01G594800PF11563Protoglobin511090.08113.6
TkA01G594800PF05615THOC7531380.0215.9
TkA01G594800PF10046BLOC1_2541380.01516.4
TkA01G594800PF00038Filament552020.09213.1
TkA01G594800PF27645Ninein_mid561246.87.1
TkA01G594800PF17675APG6_N581484.68.4
TkA01G594800PF12325TMF_TATA_bd591030.08113.8
TkA01G594800PF28933CRE9602170.1213.2
TkA01G594800PF06419COG6_N60936.97.6
TkA01G594800PF06160EzrA642170.04612.8
TkA01G594800PF06103DUF948651240.3511.8
TkA01G594800PF25762HAUS1662110.212.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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