TkA01G589950 | RubberDandelionOmics

Gene overview

TkA01G589950

Reference: TK1151 Chr: Chr01 Coordinates: 148415702-148418153 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1193 bp · TkA01G589950|TK1151|cDNA

GTAGGTCCCATTTTTGCTTCCTAACCTAATCCCAATTCCCAAATCTTAATTCTCTGCAAATGTGTACATTACATGAGTTGATTGCTTCATCAGATTTTGAGATCTATAGAACACCATTCACGATTCTTCCTATAAAAATACTCAGGTAATAATGGTACATGATCCTCATACTAGACACTGATCAATGGATCCTGAAAGCAAGAATTTTGGAAGAGGACCAAGGGAGTTAACTGGAGCCGTGGATCTTATAAGTTACTATA...

CDS

Download CDS FASTA

630 bp · TkA01G589950|TK1151|CDS

ATGGATCCTGAAAGCAAGAATTTTGGAAGAGGACCAAGGGAGTTAACTGGAGCCGTGGATCTTATAAGTTACTATAAATTGTTACCACACCATGAATTCTTCTGCAAGAAATCACTTCCATTATCAATCTCAGATACACATTACCTTCATGATGTTGTTGGAGATACAGAAATTAGAAAAGGAGAAGGCATGCAATTGGATCAGATTTTACCAAATAACACGTCTTTTTCTAGAGATATAAATATAAACACAAACACACG...

Protein

Download Protein FASTA

209 aa · TkA01G589950|TK1151|PROTEIN

MDPESKNFGRGPRELTGAVDLISYYKLLPHHEFFCKKSLPLSISDTHYLHDVVGDTEIRKGEGMQLDQILPNNTSFSRDININTNTRIQPFDFDQLREAFQLRETAPVDLPSSEKGIPTIAGKSKSEIKDKEKKHKKHKDKDREHKKHKHRHKDRSKDKDKEKKKDKSSHHDKKRKHDGNEDVNDIHRHKKSKQKSSKMDEIGAMKIVA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G589950`
TK1151 ID	TkA01G589950
OH-1004 ID	LXL04_000760
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	91.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G589950

Location Chr01:148415702-148418153 (-)

Description Similar to MED19B: Probable mediator of RNA polymerase II transcription subunit 19b

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g19480`	Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes.	No verified direct reference in this release
`At5g12230`	Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000760 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process

GO:0005634 nucleus Cellular Component

GO:0016592 mediator complex Cellular Component

GO:0003712 transcription coregulator activity Molecular Function

KEGG gene cross-reference

ath:AT5G12230

ath:AT5G19480

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.978

Rank 1 · TkA01G589950 · TK1151

Cytoplasm0.076

Rank 2 · TkA01G589950 · TK1151

Cell membrane0.023

Rank 3 · TkA01G589950 · TK1151

Endoplasmic reticulum0.011

Rank 4 · TkA01G589950 · TK1151

Mitochondrion0.006

Rank 5 · TkA01G589950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18304SabA_adhesion87-167 aa

PF24770Ig-CFAP74_291-186 aa

PF15928DUF4746109-204 aa

PF02932Neur_chan_memb124-205 aa

PF06459RR_TM4-6126-192 aa

PF02724CDC45129-194 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G589950	`PF18304`	SabA_adhesion	87	167	0.11	12.5
TkA01G589950	`PF24770`	Ig-CFAP74_2	91	186	4.0	8.6
TkA01G589950	`PF15928`	DUF4746	109	204	0.29	11.2
TkA01G589950	`PF02932`	Neur_chan_memb	124	205	0.9	10.5
TkA01G589950	`PF06459`	RR_TM4-6	126	192	0.2	12.1
TkA01G589950	`PF02724`	CDC45	129	194	2.0	7.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q6NQD9`	Arabidopsis thaliana	sp\|Q6NQD9\|MD19B_ARATH Probable mediator of RNA polymerase II transcription subunit 19b	67.500%	Swiss-Prot	High
`Q9FMP0`	Arabidopsis thaliana	sp\|Q9FMP0\|MD19A_ARATH Mediator of RNA polymerase II transcription subunit 19a	59.600%	Swiss-Prot	High

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