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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G588180
Reference: TK1151 Chr: Chr01 Coordinates: 147951960-147954007 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1943 bp · TkA01G588180|TK1151|cDNA

TTCACACACACACACATAATGAACTAGAAATGACACTATATAATAATATTTTTATCTCACCACATAGCATCATCATTCTCTTTTTCTCTAAAACCCACACATCCATATGCTTTGCTTCTTTCACTGTCTGAATCTTGAAAAAAGATAGTAATGGAAATCTAGCAGAAAAAGAACACAATCACACTGTGTGTTCGTCTTTTCTTGGCAACGGTCATCGTCTTCTTCACGCAATCTTCTTTTTTTTCAACAAAACCCCAATT...

CDS

Download CDS FASTA

1386 bp · TkA01G588180|TK1151|CDS

ATGGCGAAAAGCGGGGTGTTTGAAAGGGATCCCACCGCCGCAACGAAGGTGGCCACCGACAACTTGAAGAAGGAATTACAGCGACTTGTTAATTCGATTGTGGAGGGATCTTCACCAGATGAAGAAAACGGATTTGGATTTACGGATTGTATTGATAGAGCTACTCAAACTTTACAGAGTTTGAAGGATTTGAAACATCGATCATTAGATAATACGAGTTTTGATTCGTGCCCTAAAGAATTCAACTGCCCCCTTTCGAA...

Protein

Download Protein FASTA

461 aa · TkA01G588180|TK1151|PROTEIN

MAKSGVFERDPTAATKVATDNLKKELQRLVNSIVEGSSPDEENGFGFTDCIDRATQTLQSLKDLKHRSLDNTSFDSCPKEFNCPLSKEIMRDPVIISSGETYDRASIQKWLKAGNRSCPKTKQVLSHTILTPNQLVRDMITQWCKNRGVRLPGPLHYSDQNPATEPNHSVFLSLLNKLSSTLSDQKEAASSLRSLTKRVPSFRAYFGESNDAIPQLLAPLSGIKTETETHRDLQEDLITTLLNLSIHDNNKKLVAETPIA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G588180
TK1151 IDTkA01G588180
OH-1004 IDLXL04_000789
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)92.900
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G588180
LocationChr01:147951960-147954007 (+)
DescriptionSimilar to PUB9: U-box domain-containing protein 9
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g07360 Functions as an E3 ubiquitin ligase (By similarity).
Interactions between the S-domain receptor kinases and AtPUB-ARM E3 ubiquitin ligases suggest a conserved signaling pathway in Arabidopsis.2008 · DOI: 10.1104/pp.108.123380
At5g18320 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At5g18340 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At5g18330 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At5g01830 Functions as an E3 ubiquitin ligase. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000789 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0042631 cellular response to water deprivation Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0048527 lateral root development Biological Process
GO:0050777 negative regulation of immune response Biological Process
GO:0071215 cellular response to abscisic acid stimulus Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT2G28830
ath:AT3G07360
ath:AT3G46510
ath:AT5G18320
dosa:Os06g0102700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.560
Rank 1 · TkA01G588180 · TK1151
Nucleus0.449
Rank 2 · TkA01G588180 · TK1151
Cell membrane0.108
Rank 3 · TkA01G588180 · TK1151
Endoplasmic reticulum0.046
Rank 4 · TkA01G588180 · TK1151
Mitochondrion0.039
Rank 5 · TkA01G588180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF20669Exo70_N17-31 aa
PF08429PLU-124-67 aa
PF20669Exo70_N38-71 aa
PF04564U-box78-146 aa
PF11789zf-Nse80-120 aa
PF13445zf-RING_UBOX83-119 aa
PF08429PLU-1103-236 aa
PF13646HEAT_2115-139 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G588180PF20669Exo70_N17310.08913.8
TkA01G588180PF08429PLU-124670.03414.0
TkA01G588180PF20669Exo70_N38710.08913.8
TkA01G588180PF04564U-box781468.4e-2174.6
TkA01G588180PF11789zf-Nse801200.0005620.4
TkA01G588180PF13445zf-RING_UBOX831190.09913.4
TkA01G588180PF08429PLU-11032360.03414.0
TkA01G588180PF13646HEAT_21151390.06114.3
TkA01G588180PF20669Exo70_N1691890.08913.8
TkA01G588180PF25808TPR_LAA1_C1722920.001918.9
TkA01G588180PF04826Arm_21721890.005716.9
TkA01G588180PF25598ARM_PUB1743471.1e-1558.6
TkA01G588180PF00514Arm1741966.9e-1039.3
TkA01G588180PF24768ARM_ARMC52263172.3e-0524.6
TkA01G588180PF13513HEAT_EZ2282504.38.7
TkA01G588180PF00514Arm2312456.9e-1039.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SRT0Arabidopsis thalianasp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 955.300%Swiss-ProtHigh
Q3E9F7Arabidopsis thalianasp|Q3E9F7|PUB46_ARATH Putative U-box domain-containing protein 4636.800%Swiss-ProtMedium
Q3E9F5Arabidopsis thalianasp|Q3E9F5|PUB48_ARATH U-box domain-containing protein 4833.600%Swiss-ProtMedium
Q3E9F6Arabidopsis thalianasp|Q3E9F6|PUB47_ARATH Putative U-box domain-containing protein 4731.500%Swiss-ProtMedium
Q9LZW3Arabidopsis thalianasp|Q9LZW3|PUB16_ARATH U-box domain-containing protein 1630.200%Swiss-ProtMedium

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