TkA01G558040 | RubberDandelionOmics

Gene overview

TkA01G558040

Reference: TK1151 Chr: Chr01 Coordinates: 140345203-140350018 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3100 bp · TkA01G558040|TK1151|cDNA

AAAGCATAGGGGCTAGTTTGTAATCATCTATGTTCTGAATCGTTGAATCCCGAGGCTGAAAAGTGTACACACTGGGATTAAACCCAACCAACCATTTCATTTCCCAGTTGAATCCCGAGGCTGAAAAGCTTTTCAACCAGAAGGAACTTCTGAATCGTTTTCGCAGATCGAGGAGAGAATTTGCTGTGTGTTTTCCAATCATTAGACGAGAACAAGTTAAAAATGTCTCAAACTAGCACCGAAAATCTCTTCTCCCATCT...

CDS

Download CDS FASTA

1035 bp · TkA01G558040|TK1151|CDS

ATGTCTCAAACTAGCACCGAAAATCTCTTCTCCCATCTTTCCGACGATGTTGTTCTTAAAATATTTTTCAAGATCGAAGATGATCCTCGTAACTGGTCTCGTCTCGCTTGCGTTTGTACTAAATTCTCCAACATGATTCGTACGATTTGCTGGAAAACCAAATGCCATCAAACAATCCCTTCACTCGTCTCCGATCTCCTCCAATCCAACACTCCAATAACCTCATCCATCTCTCCTCCTGGCGGCTGGGCGTCGCTCCA...

Protein

Download Protein FASTA

344 aa · TkA01G558040|TK1151|PROTEIN

MSQTSTENLFSHLSDDVVLKIFFKIEDDPRNWSRLACVCTKFSNMIRTICWKTKCHQTIPSLVSDLLQSNTPITSSISPPGGWASLHKLAVCCPGLLHSGVLLENSDLGLERDLGPDDNYHETNLFQPGKFVSNPSCSRTTDDDNIKEHKTSVNSSDCSWSLYDDLYHDSAYGNVCHSYQSEVCEGVTEGYDSIDAVKAASEFAICKRRKICRSSRSHLASGAWNLSREQGNKLLASRFRGDCLYICDWPGCVHMEDKRN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G558040`
TK1151 ID	TkA01G558040
OH-1004 ID	LXL04_001145
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G558040

Location Chr01:140345203-140350018 (+)

Description Similar to EID1: Phytochrome A-associated F-box protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g02440`	Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001145 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009585 red, far-red light phototransduction Biological Process

GO:0010099 regulation of photomorphogenesis Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0048366 leaf development Biological Process

GO:0048573 photoperiodism, flowering Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0004842 ubiquitin-protein transferase activity Molecular Function

KEGG gene cross-reference

ath:AT4G02440

ath:AT5G15440

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.684

Rank 1 · TkA01G558040 · TK1151

Cytoplasm0.273

Rank 2 · TkA01G558040 · TK1151

Cell membrane0.065

Rank 3 · TkA01G558040 · TK1151

Mitochondrion0.060

Rank 4 · TkA01G558040 · TK1151

Endoplasmic reticulum0.045

Rank 5 · TkA01G558040 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29466F-box_COS11110-52 aa

PF00646F-box10-49 aa

PF12937F-box-like15-56 aa

PF23580Znf_XAF1_N55-61 aa

PF00646F-box209-219 aa

PF27778EID2_C214-337 aa

PF23580Znf_XAF1_N291-310 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G558040	`PF29466`	F-box_COS111	10	52	0.29	12.5
TkA01G558040	`PF00646`	F-box	10	49	5.0	7.9
TkA01G558040	`PF12937`	F-box-like	15	56	0.0076	16.7
TkA01G558040	`PF23580`	Znf_XAF1_N	55	61	2.1	8.5
TkA01G558040	`PF00646`	F-box	209	219	5.0	7.9
TkA01G558040	`PF27778`	EID2_C	214	337	2.7e-39	134.7
TkA01G558040	`PF23580`	Znf_XAF1_N	291	310	2.1	8.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LEA8`	Arabidopsis thaliana	sp\|Q8LEA8\|EID1_ARATH Phytochrome A-associated F-box protein	57.500%	Swiss-Prot	High

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