TkA01G547620 | RubberDandelionOmics

Gene overview

TkA01G547620

Reference: TK1151 Chr: Chr01 Coordinates: 137534488-137535913 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1128 bp · TkA01G547620|TK1151|cDNA

CCGCTGGAAACCGCTTTCCATCTTCTTCACTAGTCACGACACCTGTATCTACAACCCAATATAATATGATCCAATCCTCCTCCATAATCAATCACAATCCCTGTTCTTTCTCTCTCTCATTCTCTTTCAAACATACACACACTAGATTTAGGAACTGCAGCAGGAATTGATATCGATGACAACCAAGGAGCGGAAGATACTGGTGGCGGTGGACGAAGGCGAGGAGAGCACGTACGCGCTGTCCTGGTGCCTGAAAAACC...

CDS

Download CDS FASTA

501 bp · TkA01G547620|TK1151|CDS

ATGACAACCAAGGAGCGGAAGATACTGGTGGCGGTGGACGAAGGCGAGGAGAGCACGTACGCGCTGTCCTGGTGCCTGAAAAACCTTGTCACCGAGAATTCAAAAGACACCCTCGTCCTCCTCTACGTCAAACCACCGCAGGTCGTCTACACAGCTCTCGATGGAACAGGGTATTTGTTTTCGCCGGATATAATCGCCACCATGGATAACTACAGGAACCAGGTAGCTGAATCAGTGATTGAAAAGGCCAAAAAGCTTTG...

Protein

Download Protein FASTA

166 aa · TkA01G547620|TK1151|PROTEIN

MTTKERKILVAVDEGEESTYALSWCLKNLVTENSKDTLVLLYVKPPQVVYTALDGTGYLFSPDIIATMDNYRNQVAESVIEKAKKLCKDLQDVKVETRVENGDARDVICDVAEKMGVDMVVLGTHGYGMIKRAFLGSVSNHCAQNAKCPVLIVRKPKTSGAATSTS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G547620`
TK1151 ID	TkA01G547620
OH-1004 ID	LXL04_001325
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 82.587 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G547620

Location Chr01:137534488-137535913 (+)

Description Similar to At3g01520: Universal stress protein A-like protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g54430`	Universal stress protein PHOS32.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001325 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016208 AMP binding Molecular Function

KEGG gene cross-reference

ath:AT3G01520

bsu:BSU39250

mja:MJ_0531

mja:MJ_0577

sha:SH1215

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.442

Rank 1 · TkA01G547620 · TK1151

Cell membrane0.314

Rank 2 · TkA01G547620 · TK1151

Nucleus0.196

Rank 3 · TkA01G547620 · TK1151

Lysosome / Vacuole0.144

Rank 4 · TkA01G547620 · TK1151

Endoplasmic reticulum0.119

Rank 5 · TkA01G547620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25199nSTAND_NTPase54-41 aa

PF00582Usp6-154 aa

PF30398EF-hand_EFCB554-115 aa

PF11363DUF316454-118 aa

PF00875DNA_photolyase76-144 aa

PF25199nSTAND_NTPase5109-128 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G547620	`PF25199`	nSTAND_NTPase5	4	41	0.3	11.6
TkA01G547620	`PF00582`	Usp	6	154	1e-33	117.5
TkA01G547620	`PF30398`	EF-hand_EFCB5	54	115	0.0023	19.1
TkA01G547620	`PF11363`	DUF3164	54	118	0.0092	16.3
TkA01G547620	`PF00875`	DNA_photolyase	76	144	0.024	15.3
TkA01G547620	`PF25199`	nSTAND_NTPase5	109	128	0.3	11.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VYN9`	Arabidopsis thaliana	sp\|Q8VYN9\|PHO32_ARATH Universal stress protein PHOS32	31.900%	Swiss-Prot	Medium

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