TkA01G480270 | RubberDandelionOmics

Gene overview

TkA01G480270

Reference: TK1151 Chr: Chr01 Coordinates: 120295142-120295534 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

393 bp · TkA01G480270|TK1151|cDNA

ATGACCCTTTTGGCCGGAACCACCGTCGAGTGCATGCGTCCAAGGGTGTTTTTCGCAGCGGCAGTGATCGGCGTCCACACCGGCGTCGACGACTTTCTCTACGCCTGCGGAATCTTCCGCCTCCCTGCGTTGTATTTGATCACGGCGGTGATCGGCGTCCTCACCGGCGTCGCGTTTCTGTTGGTGAAACAGAAATTCACGCCGTATTCGATCACGGCGTTGTATGGACTGGTGTTGCCGATGGTGGAGATGACGTATAA...

CDS

Download CDS FASTA

393 bp · TkA01G480270|TK1151|CDS

ATGACCCTTTTGGCCGGAACCACCGTCGAGTGCATGCGTCCAAGGGTGTTTTTCGCAGCGGCAGTGATCGGCGTCCACACCGGCGTCGACGACTTTCTCTACGCCTGCGGAATCTTCCGCCTCCCTGCGTTGTATTTGATCACGGCGGTGATCGGCGTCCTCACCGGCGTCGCGTTTCTGTTGGTGAAACAGAAATTCACGCCGTATTCGATCACGGCGTTGTATGGACTGGTGTTGCCGATGGTGGAGATGACGTATAA...

Protein

Download Protein FASTA

130 aa · TkA01G480270|TK1151|PROTEIN

MTLLAGTTVECMRPRVFFAAAVIGVHTGVDDFLYACGIFRLPALYLITAVIGVLTGVAFLLVKQKFTPYSITALYGLVLPMVEMTYNKAKQAITYTPVTNSGQNGHMRTILKNSWVNGYKKSLRVIYEQF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G480270`
TK1151 ID	TkA01G480270
OH-1004 ID	LXL04_032876
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	92.700
Protein coverage (%)	TK1151 84.615 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA01G480270

Location Chr01:120295142-120295534 (-)

Description Similar to PUP2: Purine permease 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g28230`	Proton-coupled purine transporter mediating adenine and trans-zeatin uptake.	Transport of cytokinins mediated by purine transporters of the PUP family expressed in phloem, hydathodes, and pollen of Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.01700.x Recycling of pyridoxine (vitamin B6) by PUP1 in Arabidopsis.2013 · DOI: 10.1111/tpj.12195

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032876 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006863 purine nucleobase transport Biological Process

GO:0010184 cytokinin transport Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0005345 purine nucleobase transmembrane transporter activity Molecular Function

GO:0015211 purine nucleoside transmembrane transporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G28220

ath:AT1G28230

ath:AT2G33750

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.319

Rank 1 · TkA01G480270 · TK1151

Cytoplasm0.261

Rank 2 · TkA01G480270 · TK1151

Endoplasmic reticulum0.167

Rank 3 · TkA01G480270 · TK1151

Nucleus0.163

Rank 4 · TkA01G480270 · TK1151

Cell membrane0.113

Rank 5 · TkA01G480270 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16913PUNUT9-73 aa

PF16913PUNUT72-99 aa

PF07501G596-129 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G480270	`PF16913`	PUNUT	9	73	4.1e-09	36.8
TkA01G480270	`PF16913`	PUNUT	72	99	4.1e-09	36.8
TkA01G480270	`PF07501`	G5	96	129	0.33	11.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FZ96`	Arabidopsis thaliana	sp\|Q9FZ96\|PUP1_ARATH Purine permease 1	32.600%	Swiss-Prot	Medium

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