TkA01G185880 | RubberDandelionOmics

Gene overview

TkA01G185880

Reference: TK1151 Chr: Chr01 Coordinates: 47678381-47680768 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

554 bp · TkA01G185880|TK1151|cDNA

CCACCACCTCCACAATACGCCATCAGTGTCTCAGCTCAACTCATGAACACTACCGGTCAATGGTCCACCGGACTTTGTGATTGTGGCTCTGATCATGATTACGTCAACTGTTTCATGACATGTTGCTGCCCATGCATATATTTTGGACAAATTGCGGAAATTGTCGACAAGGGTACCACTTCTTGGGTTGAACATTGTGCCATTTATTCAGTAATTCAATTCTTCATAGGATATGGAAGTTTATACTCTTTTATGTACCG...

CDS

Download CDS FASTA

429 bp · TkA01G185880|TK1151|CDS

ATGAACACTACCGGTCAATGGTCCACCGGACTTTGTGATTGTGGCTCTGATCATGATTACGTCAACTGTTTCATGACATGTTGCTGCCCATGCATATATTTTGGACAAATTGCGGAAATTGTCGACAAGGGTACCACTTCTTGGGTTGAACATTGTGCCATTTATTCAGTAATTCAATTCTTCATAGGATATGGAAGTTTATACTCTTTTATGTACCGTTCTGATCTAAGAGAACAATACATGTTGCCTGAGGAACCTTG...

Protein

Download Protein FASTA

142 aa · TkA01G185880|TK1151|PROTEIN

MNTTGQWSTGLCDCGSDHDYVNCFMTCCCPCIYFGQIAEIVDKGTTSWVEHCAIYSVIQFFIGYGSLYSFMYRSDLREQYMLPEEPCSDCCVHCFCECCALCQEYRELKHRGFDPSLGWHGNLKKQNQGVEIPPFGQGEMER

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G185880`
TK1151 ID	TkA01G185880
OH-1004 ID	LXL04_011377
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	72.500
Protein coverage (%)	TK1151 100.000 / OH-1004 90.909 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G185880

Location Chr01:47678381-47680768 (+)

Description Similar to PCR2: Protein PLANT CADMIUM RESISTANCE 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g35525`	May be involved in heavy metals transport.	No verified direct reference in this release
`At1g14880`	Involved in glutathione-independent cadmium resistance.	A novel family of cys-rich membrane proteins mediates cadmium resistance in Arabidopsis.2004 · DOI: 10.1104/pp.103.037739
`At1g14870`	Zinc transporter acting in both zinc extrusion and long-distance zinc transport.	Arabidopsis PCR2 is a zinc exporter involved in both zinc extrusion and long-distance zinc transport.2010 · DOI: 10.1105/tpc.109.070185
`At1g68610`	May be involved in heavy metals transport.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011377 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006979 response to oxidative stress Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT1G14870

ath:AT1G14880

ath:AT5G35525

zma:100284761

zma:100500710

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.491

Rank 1 · TkA01G185880 · TK1151

Cytoplasm0.174

Rank 2 · TkA01G185880 · TK1151

Endoplasmic reticulum0.156

Rank 3 · TkA01G185880 · TK1151

Lysosome / Vacuole0.137

Rank 4 · TkA01G185880 · TK1151

Golgi apparatus0.134

Rank 5 · TkA01G185880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04749PLAC87-107 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G185880	`PF04749`	PLAC8	7	107	6.9e-31	107.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P0CW97`	Arabidopsis thaliana	sp\|P0CW97\|PCR3_ARATH Protein PLANT CADMIUM RESISTANCE 3	54.200%	Swiss-Prot	High
`Q9LQU2`	Arabidopsis thaliana	sp\|Q9LQU2\|PCR1_ARATH Protein PLANT CADMIUM RESISTANCE 1	51.400%	Swiss-Prot	High
`Q9LQU4`	Arabidopsis thaliana	sp\|Q9LQU4\|PCR2_ARATH Protein PLANT CADMIUM RESISTANCE 2	51.400%	Swiss-Prot	High
`Q9SX24`	Arabidopsis thaliana	sp\|Q9SX24\|PCR11_ARATH Protein PLANT CADMIUM RESISTANCE 11	54.900%	Swiss-Prot	High

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