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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G118250
Reference: TK1151 Chr: Chr01 Coordinates: 29986982-29990678 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1581 bp · TkA01G118250|TK1151|cDNA

ATGTGTAGATCAGTAATGGAATTGAATCGAGACCATGACGGAATCATAGCATGGACATGGAATTTTGAGAGGGCAATGATTAAGACCGTGACTGAATCATACCCTGGGGGAGCGGGTGGACATGAAGCATCTGGGATGTGTAGAGCAGTAATGGAATTGAATCAAGTTGCATCAGTTGCAACATTCCCATCCATTGAAAATGTGGGAGCGGATGGACATGAAGCATTTGGGGTGTGTAGATCAGTAATGGACTTGAATGG...

CDS

Download CDS FASTA

1581 bp · TkA01G118250|TK1151|CDS

ATGTGTAGATCAGTAATGGAATTGAATCGAGACCATGACGGAATCATAGCATGGACATGGAATTTTGAGAGGGCAATGATTAAGACCGTGACTGAATCATACCCTGGGGGAGCGGGTGGACATGAAGCATCTGGGATGTGTAGAGCAGTAATGGAATTGAATCAAGTTGCATCAGTTGCAACATTCCCATCCATTGAAAATGTGGGAGCGGATGGACATGAAGCATTTGGGGTGTGTAGATCAGTAATGGACTTGAATGG...

Protein

Download Protein FASTA

526 aa · TkA01G118250|TK1151|PROTEIN

MCRSVMELNRDHDGIIAWTWNFERAMIKTVTESYPGGAGGHEASGMCRAVMELNQVASVATFPSIENVGADGHEAFGVCRSVMDLNGCASVETLSHIENAGHATSATNQNIPPSITQSINVDIHTGTPNESVQISQPINVVAKQLWTPLVEEKPYKGQQFASFESALAYYKEYGRTCGFEIRKATTEVSKGGGGYSRRYIVCNKEGENKKKVAYDPLKDKKKQHRNRPSHRVKCKASVRLKLNNFGIWEITHFEEQHTHD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G118250
TK1151 IDTkA01G118250
OH-1004 IDLXL04_038546
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)63.500
Protein coverage (%)TK1151 93.536 / OH-1004 84.321
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G118250
LocationChr01:29986982-29990678 (+)
DescriptionSimilar to FRS5: Protein FAR1-RELATED SEQUENCE 5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038546 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0009639 response to red or far red light Biological Process
GO:0010017 red or far-red light signaling pathway Biological Process
GO:0010018 far-red light signaling pathway Biological Process
GO:0010218 response to far red light Biological Process
GO:0042753 positive regulation of circadian rhythm Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:1900056 negative regulation of leaf senescence Biological Process
GO:0005634 nucleus Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G10240
ath:AT1G76320
ath:AT2G27110
ath:AT4G15090
ath:AT4G38180
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.955
Rank 1 · TkA01G118250 · TK1151
Cytoplasm0.120
Rank 2 · TkA01G118250 · TK1151
Cell membrane0.017
Rank 3 · TkA01G118250 · TK1151
Mitochondrion0.016
Rank 4 · TkA01G118250 · TK1151
Endoplasmic reticulum0.008
Rank 5 · TkA01G118250 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03101FAR1169-262 aa
PF19030TSP1_ADAMTS192-236 aa
PF04434SWIM337-363 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G118250PF03101FAR11692623.7e-1970.0
TkA01G118250PF19030TSP1_ADAMTS1922360.1213.4
TkA01G118250PF04434SWIM3373630.0005920.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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