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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G085470
Reference: TK1151 Chr: Chr01 Coordinates: 21800040-21802337 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2298 bp · TkA01G085470|TK1151|cDNA

ATGTCTATAATCGCTGTATCAAAACCCCATGTATTGAAACACAGCTTCTTCTCTAATCTCGCAAGAATTTCCAATTCACAGCATCAAGGTCTCTACTTTTTCTGTTCATCGACTTCTTCAAATGAACCCACAAATGAAGAAATCCCGAAACCGGAAACTCCAGATTCGTCCACCGAACCACATCCTGAGAAACCGGTCTCCACCATTGAAGCACAGCCAGGGACGATCCAGAATCGCGAACCCAGACTCCCACGAGGTAA...

CDS

Download CDS FASTA

2298 bp · TkA01G085470|TK1151|CDS

ATGTCTATAATCGCTGTATCAAAACCCCATGTATTGAAACACAGCTTCTTCTCTAATCTCGCAAGAATTTCCAATTCACAGCATCAAGGTCTCTACTTTTTCTGTTCATCGACTTCTTCAAATGAACCCACAAATGAAGAAATCCCGAAACCGGAAACTCCAGATTCGTCCACCGAACCACATCCTGAGAAACCGGTCTCCACCATTGAAGCACAGCCAGGGACGATCCAGAATCGCGAACCCAGACTCCCACGAGGTAA...

Protein

Download Protein FASTA

765 aa · TkA01G085470|TK1151|PROTEIN

MSIIAVSKPHVLKHSFFSNLARISNSQHQGLYFFCSSTSSNEPTNEEIPKPETPDSSTEPHPEKPVSTIEAQPGTIQNREPRLPRGKHRNPEKIEDIICRMMANRVWTTRLQNSIRTLVPAFDHNLVYNVLHSARHPDHALQFFRWVERSGLFKHDRETHYKIIDILGKSSKLNHARLILLDMPKKGLKWDEDLFVVLIDSYGKAGIVQESVKIFRSMEELGVPRTIKSYDTLFKVIMRRGRYMMAKRYFNKMLSEHIIP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G085470
TK1151 IDTkA01G085470
OH-1004 IDLXL04_005011
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)90.900
Protein coverage (%)TK1151 90.980 / OH-1004 77.679
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G085470
LocationChr01:21800040-21802337 (+)
DescriptionSimilar to At2g37230: Pentatricopeptide repeat-containing protein At2g37230
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g37230 Large ribosomal subunit protein mL102 (rPPR5). No verified direct reference in this release
At1g03560 Pentatricopeptide repeat-containing protein At1g03560, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005011 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009409 response to cold Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005840 ribosome Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G02060
ath:AT1G05670
ath:AT2G37230
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.878
Rank 1 · TkA01G085470 · TK1151
Plastid0.068
Rank 2 · TkA01G085470 · TK1151
Nucleus0.050
Rank 3 · TkA01G085470 · TK1151
Cytoplasm0.034
Rank 4 · TkA01G085470 · TK1151
Cell membrane0.013
Rank 5 · TkA01G085470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01535PPR86-104 aa
PF13041PPR_2131-152 aa
PF23276TPR_24135-218 aa
PF28774DUF8457151-193 aa
PF00637Clathrin156-207 aa
PF29070MSC6_N159-321 aa
PF13041PPR_2163-192 aa
PF01535PPR163-188 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G085470PF01535PPR861041.1e-57189.1
TkA01G085470PF13041PPR_21311527.2e-75247.7
TkA01G085470PF23276TPR_241352184.9e-31108.1
TkA01G085470PF28774DUF84571511930.0514.6
TkA01G085470PF00637Clathrin1562070.4411.0
TkA01G085470PF29070MSC6_N1593211.8e-1660.9
TkA01G085470PF13041PPR_21631927.2e-75247.7
TkA01G085470PF01535PPR1631881.1e-57189.1
TkA01G085470PF13812PPR_31722042.3e-34118.0
TkA01G085470PF13812PPR_31792372.3e-34118.0
TkA01G085470PF23276TPR_241842404.9e-31108.1
TkA01G085470PF12854PPR_11872199.4e-48160.4
TkA01G085470PF13762MNE11922503.3e-0524.6
TkA01G085470PF24760TPR_IF140_C1922180.0714.2
TkA01G085470PF25058ARM_TT211932175.4e-0523.9
TkA01G085470PF01535PPR1962231.1e-57189.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZUU3Arabidopsis thalianasp|Q9ZUU3|PP190_ARATH Large ribosomal subunit protein mL102 (rPPR5)58.100%Swiss-ProtHigh
Q9LR67Arabidopsis thalianasp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560, mitochondrial27.800%Swiss-ProtLow

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