RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G033210
Reference: TK1151 Chr: Chr01 Coordinates: 8617462-8624157 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3702 bp · TkA01G033210|TK1151|cDNA

ATGATGCGAAAGATAAGTGAAAATACACATGGGCATCCATTGAAGGACCAGAAGTTCCCTCAATCAGGTAATACAACACCATGTACATCTTGTTCTCTTGGAAAGTTAATTATAAGGCCCTCACCAGTAAAAGTTGAAAATGAATCACCCAAGTTTCTTGAAAGAATTCAAGGTGATATATGTGGACCAATTCATCCACCATCTGGGCCTTTTAGATACTTCATGGTCCTGATAGATGCATCCAGCAGATGGTCTCATGT...

CDS

Download CDS FASTA

3702 bp · TkA01G033210|TK1151|CDS

ATGATGCGAAAGATAAGTGAAAATACACATGGGCATCCATTGAAGGACCAGAAGTTCCCTCAATCAGGTAATACAACACCATGTACATCTTGTTCTCTTGGAAAGTTAATTATAAGGCCCTCACCAGTAAAAGTTGAAAATGAATCACCCAAGTTTCTTGAAAGAATTCAAGGTGATATATGTGGACCAATTCATCCACCATCTGGGCCTTTTAGATACTTCATGGTCCTGATAGATGCATCCAGCAGATGGTCTCATGT...

Protein

Download Protein FASTA

1233 aa · TkA01G033210|TK1151|PROTEIN

MMRKISENTHGHPLKDQKFPQSGNTTPCTSCSLGKLIIRPSPVKVENESPKFLERIQGDICGPIHPPSGPFRYFMVLIDASSRWSHVCLLSTRNMAFAKFLAQIIKLRAHFPDYAIKRVRLDNAGEFTSQSFNDYCMAVGIVVEHPVAHVHTQNGLAESLIKRLQLIARPLIMRTKLPVSIWGHAILHVVSLIRIRPSAYHTYSPLQLVFGQEPNISHLRIFGCAVYVPIAPPQRTKMGPQRRLGIYVGYETVSIIRYLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA01G033210
TK1151 IDTkA01G033210
OH-1004 IDLXL04_009584
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)93.500
Protein coverage (%)TK1151 69.343 / OH-1004 73.251
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G033210
LocationChr01:8617462-8624157 (-)
DescriptionSimilar to GIP: Copia protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g63640 Kinesin-like protein KIN-14J. No verified direct reference in this release
At5g41310 Kinesin-like protein KIN-14K. No verified direct reference in this release
At1g73860 Kinesin-like protein KIN-14P. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0744000 Kinesin-like protein KIN-14C. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009584 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006281 DNA repair Biological Process
GO:0006310 DNA recombination Biological Process
GO:0006508 proteolysis Biological Process
GO:0015074 DNA integration Biological Process
GO:0071897 DNA biosynthetic process Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0042575 DNA polymerase complex Cellular Component
GO:0003676 nucleic acid binding Molecular Function
GO:0003964 RNA-directed DNA polymerase activity Molecular Function
GO:0004190 aspartic-type endopeptidase activity Molecular Function
GO:0004519 endonuclease activity Molecular Function
KEGG gene cross-reference
ath:AT5G50100
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.577
Rank 1 · TkA01G033210 · TK1151
Nucleus0.362
Rank 2 · TkA01G033210 · TK1151
Mitochondrion0.117
Rank 3 · TkA01G033210 · TK1151
Cell membrane0.057
Rank 4 · TkA01G033210 · TK1151
Endoplasmic reticulum0.038
Rank 5 · TkA01G033210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00665rve54-144 aa
PF29688TnsB_C115-165 aa
PF25597SH3_retrovirus224-283 aa
PF07727RVT_2494-532 aa
PF07727RVT_2534-702 aa
PF28496NEAP959-977 aa
PF02183HALZ982-999 aa
PF04508Pox_A_type_inc992-1001 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G033210PF00665rve541443.4e-0834.4
TkA01G033210PF29688TnsB_C1151650.02515.1
TkA01G033210PF25597SH3_retrovirus2242831.9e-0731.5
TkA01G033210PF07727RVT_24945326.1e-43147.9
TkA01G033210PF07727RVT_25347026.1e-43147.9
TkA01G033210PF28496NEAP9599771.110.3
TkA01G033210PF02183HALZ9829990.312.0
TkA01G033210PF04508Pox_A_type_inc99210010.5710.8
TkA01G033210PF28496NEAP101310521.110.3
TkA01G033210PF04508Pox_A_type_inc102310370.5710.8
TkA01G033210PF14775NYD-SP28_assoc111011360.06914.0
TkA01G033210PF02183HALZ111611360.312.0
TkA01G033210PF00225Kinesin114812332.6e-29103.0
TkA01G033210PF14775NYD-SP28_assoc120712310.06914.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
B3H6Z8Arabidopsis thalianasp|B3H6Z8|KN14J_ARATH Kinesin-like protein KIN-14J35.900%Swiss-ProtLow
F4JX00Arabidopsis thalianasp|F4JX00|KN14K_ARATH Kinesin-like protein KIN-14K31.300%Swiss-ProtLow
Q0WN69Arabidopsis thalianasp|Q0WN69|KN14P_ARATH Kinesin-like protein KIN-14P27.600%Swiss-ProtLow
Q5JKW1Oryza sativa subsp. japonicasp|Q5JKW1|KN14C_ORYSJ Kinesin-like protein KIN-14C32.100%Swiss-ProtLow

JBrowse

View in Genome Browser