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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G031880
Reference: TK1151 Chr: Chr01 Coordinates: 8244069-8247482 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2555 bp · TkA01G031880|TK1151|cDNA

TAAATGTACATCCCCAAAAGCAAAGCCAATAATGTATATGGGTTAATTTATTTCTGAATGAGAAGCAAACAAAGGAAAGGACAAAACCATGCAACTTCAGACTCGTTTGCTTTTTGGTTTTTTGGTTTCATTTTGATGGGTCGCTTGAAAGAGGTCCAAATTTAGGGATACGTTCTGATCCACATCTCTCTCACTTTCTCTCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACCGTCTTGT...

CDS

Download CDS FASTA

1620 bp · TkA01G031880|TK1151|CDS

ATGAAGGGCATGTTTTTGGATGACAGTATGTCAAACTTAACATCAGCATCAAATGAAGCAAGCCTATCTTCATCAAGTAACAAGAATGAAGTTAGTACTACCATGTACCCTCCACCACAACAGATGCAACAGTCCTTAGCTTCTGTGCCAATTAATTCCAACAACCAAATACAAACTAATAACAAGAAAAAGAGAAATCTTCCAGGCAATCCAGACCCAGAAGCTGAGGTGATAGCAATGTCTCCGAAATCTCTAATGGC...

Protein

Download Protein FASTA

539 aa · TkA01G031880|TK1151|PROTEIN

MKGMFLDDSMSNLTSASNEASLSSSSNKNEVSTTMYPPPQQMQQSLASVPINSNNQIQTNNKKKRNLPGNPDPEAEVIAMSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQKSKLEVIRKKVYVCPEPSCVHHEPARALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCGALAGENARSSSSSSLLLSSNQLPLHLPINFPLKTEPQLHHLQQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G031880
TK1151 IDTkA01G031880
OH-1004 IDLXL04_005591
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G031880
LocationChr01:8244069-8247482 (+)
DescriptionSimilar to IDD7: Protein indeterminate-domain 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g55110 Probable transcription factor. No verified direct reference in this release
At3g50700 Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. No verified direct reference in this release
At1g03840 Transcription factor that regulates tissue boundaries and asymmetric cell division.
DELLA protein functions as a transcriptional activator through the DNA binding of the indeterminate domain family proteins.2014 · DOI: 10.1073/pnas.1321669111
At5g03150 Transcription factor that, together with BIB, regulates tissue boundaries and asymmetric cell division by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action. No verified direct reference in this release
At4g02670 Probable transcription factor. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005591 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0008356 asymmetric cell division Biological Process
GO:0009740 gibberellic acid mediated signaling pathway Biological Process
GO:0009937 regulation of gibberellic acid mediated signaling pathway Biological Process
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway Biological Process
GO:0010075 regulation of meristem growth Biological Process
GO:0010336 gibberellic acid homeostasis Biological Process
GO:0034504 protein localization to nucleus Biological Process
GO:0045893 positive regulation of DNA-templated transcription Biological Process
GO:0048364 root development Biological Process
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT1G03840
ath:AT1G55110
ath:AT3G13810
ath:AT3G50700
ath:AT4G02670
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.981
Rank 1 · TkA01G031880 · TK1151
Cytoplasm0.074
Rank 2 · TkA01G031880 · TK1151
Cell membrane0.022
Rank 3 · TkA01G031880 · TK1151
Endoplasmic reticulum0.015
Rank 4 · TkA01G031880 · TK1151
Plastid0.007
Rank 5 · TkA01G031880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04810zf-Sec23_Sec2487-98 aa
PF23250zf_DPOE_287-103 aa
PF17283Zn_ribbon_SprT88-100 aa
PF22995C2CH-3rd_BIRD-IDD90-100 aa
PF00096zf-C2H291-113 aa
PF13894zf-C2H2_491-113 aa
PF23447DUF712891-100 aa
PF22996C2H2-2nd_BIRD-IDD129-163 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G031880PF04810zf-Sec23_Sec2487980.1812.5
TkA01G031880PF23250zf_DPOE_2871030.1912.2
TkA01G031880PF17283Zn_ribbon_SprT881002.88.7
TkA01G031880PF22995C2CH-3rd_BIRD-IDD901002.8e-1556.4
TkA01G031880PF00096zf-C2H2911133.3e-0834.2
TkA01G031880PF13894zf-C2H2_4911130.1513.5
TkA01G031880PF23447DUF7128911002.19.0
TkA01G031880PF22996C2H2-2nd_BIRD-IDD1291631.5e-2280.1
TkA01G031880PF17283Zn_ribbon_SprT1321362.88.7
TkA01G031880PF13894zf-C2H2_41541630.1513.5
TkA01G031880PF23250zf_DPOE_21561790.1912.2
TkA01G031880PF04810zf-Sec23_Sec241631810.1812.5
TkA01G031880PF23447DUF71281631922.19.0
TkA01G031880PF22995C2CH-3rd_BIRD-IDD1671912.8e-1556.4
TkA01G031880PF13894zf-C2H2_41681880.1513.5
TkA01G031880PF17283Zn_ribbon_SprT1681812.88.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8H1F5Arabidopsis thalianasp|Q8H1F5|IDD7_ARATH Protein indeterminate-domain 754.200%Swiss-ProtMedium
Q9SCQ6Arabidopsis thalianasp|Q9SCQ6|IDD2_ARATH Zinc finger protein GAI-ASSOCIATED FACTOR 181.000%Swiss-ProtLow
Q9ZWA6Arabidopsis thalianasp|Q9ZWA6|IDD3_ARATH Zinc finger protein MAGPIE85.400%Swiss-ProtLow
Q700D2Arabidopsis thalianasp|Q700D2|IDD10_ARATH Zinc finger protein JACKDAW69.700%Swiss-ProtLow
O22759Arabidopsis thalianasp|O22759|IDD12_ARATH Protein indeterminate-domain 1283.500%Swiss-ProtLow

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