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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G028390
Reference: TK1151 Chr: Chr01 Coordinates: 7282226-7285000 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2691 bp · TkA01G028390|TK1151|cDNA

GATAATGTGACTCAACTGTTGATAATTATTCATTCTTGAAAATATAACGTTAAAGGATCGGGTGCTCATTTTATTAGCCTTTTGCATATGTGTACATTAAAGATGAGGGCACCGTGGATCACTAGCATTTTCTTTGCCCTCTTTCTTATCTTCTCATCCATAGCTACTCAACCTATTGTACGCCTTTTAGACTCATGGACCAACGATGAATCTTCTTTTAGTTTCACCGATTTCACAGATGGCTCAAAGATCAGAGCCAT...

CDS

Download CDS FASTA

2490 bp · TkA01G028390|TK1151|CDS

ATGTGTACATTAAAGATGAGGGCACCGTGGATCACTAGCATTTTCTTTGCCCTCTTTCTTATCTTCTCATCCATAGCTACTCAACCTATTGTACGCCTTTTAGACTCATGGACCAACGATGAATCTTCTTTTAGTTTCACCGATTTCACAGATGGCTCAAAGATCAGAGCCATGTATGTTGTAAATGGCGATCAATTGAACTTAACCACACCCACACCCACTTTCACATGTGGCTTCTTCTGTAATGGAACCTGTGAATC...

Protein

Download Protein FASTA

829 aa · TkA01G028390|TK1151|PROTEIN

MCTLKMRAPWITSIFFALFLIFSSIATQPIVRLLDSWTNDESSFSFTDFTDGSKIRAMYVVNGDQLNLTTPTPTFTCGFFCNGTCESYIFAILISLPISSPVEELKNIPEVVWSANRDHPVSNGAILNLNSPGGFVLQDANGSIVWTTNITAKSITGSFLNIQGNLGLVDDNVTVWESFAHPTDCLVRGQKLYPGQELTTSASPFFGGAQKDLYSLKVSKKGMAEFESDYVKFVDTGLHLNIKSTDQLWGISVTVGVVLR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G028390
TK1151 IDTkA01G028390
OH-1004 IDLXL04_005612
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.700
Protein coverage (%)TK1151 99.397 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G028390
LocationChr01:7282226-7285000 (-)
DescriptionSimilar to SD25: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g32300 G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5. No verified direct reference in this release
At5g24080 G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080. No verified direct reference in this release
At1g34300 G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300. No verified direct reference in this release
At5g35370 G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370. No verified direct reference in this release
At2g19130 G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005612 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0046777 protein autophosphorylation Biological Process
GO:0048544 recognition of pollen Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0004672 protein kinase activity Molecular Function
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005516 calmodulin binding Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0030246 carbohydrate binding Molecular Function
GO:0031625 ubiquitin protein ligase binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT1G34300
ath:AT2G19130
ath:AT4G32300
ath:AT5G24080
ath:AT5G35370
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.851
Rank 1 · TkA01G028390 · TK1151
Endoplasmic reticulum0.084
Rank 2 · TkA01G028390 · TK1151
Cytoplasm0.074
Rank 3 · TkA01G028390 · TK1151
Nucleus0.042
Rank 4 · TkA01G028390 · TK1151
Extracellular0.030
Rank 5 · TkA01G028390 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase23-58 aa
PF01453B_lectin111-193 aa
PF08276PAN_2320-341 aa
PF08276PAN_2354-393 aa
PF00024PAN_1355-411 aa
PF14295PAN_4370-408 aa
PF25822UBL_USP40370-387 aa
PF07714PK_Tyr_Ser-Thr519-785 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G028390PF00069Pkinase23586.7e-51173.9
TkA01G028390PF01453B_lectin1111932.1e-1351.3
TkA01G028390PF08276PAN_23203410.0002521.8
TkA01G028390PF08276PAN_23543930.0002521.8
TkA01G028390PF00024PAN_13554110.005417.3
TkA01G028390PF14295PAN_43704080.01815.8
TkA01G028390PF25822UBL_USP403703871.010.2
TkA01G028390PF07714PK_Tyr_Ser-Thr5197851.3e-41143.3
TkA01G028390PF00069Pkinase5207846.7e-51173.9
TkA01G028390PF03109ABC15235706.2e-0626.3
TkA01G028390PF03109ABC16276766.2e-0626.3
TkA01G028390PF14531Kinase-like6277250.006916.4
TkA01G028390PF10140YukC6316680.4210.2
TkA01G028390PF25822UBL_USP407187581.010.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8RWZ5Arabidopsis thalianasp|Q8RWZ5|SD25_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SD2-533.900%Swiss-ProtMedium
Q9FLV4Arabidopsis thalianasp|Q9FLV4|Y5248_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g2408030.300%Swiss-ProtMedium
Q9XID3Arabidopsis thalianasp|Q9XID3|Y1343_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g3430031.000%Swiss-ProtMedium
O65238Arabidopsis thalianasp|O65238|Y5537_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At5g3537033.000%Swiss-ProtMedium
O64477Arabidopsis thalianasp|O64477|Y2913_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At2g1913032.600%Swiss-ProtMedium

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