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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G022750
Reference: TK1151 Chr: Chr01 Coordinates: 5823684-5825483 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1389 bp · TkA01G022750|TK1151|cDNA

ATGTCTATCGACAAACAGTTTCAACATCTCAAAATAAATCTAGAAGCTATAATATTAGCAACCAACAACTTTTCTGAAGATCATTGCATAGGTGCTGGAGGTTTTGGAAAGGTTTACAAAGGAGATCTACTACTTTCAGCGCGGATTACCACAGTTGCTTTAAAACGATTAGATCGTACGTTCGGGCAAGGAGATTCTGAGTTTTGGAAGGAGGTCATTATGCTCTCCCTCTACAGTCATGCAAATATCATATCCCTTTT...

CDS

Download CDS FASTA

1389 bp · TkA01G022750|TK1151|CDS

ATGTCTATCGACAAACAGTTTCAACATCTCAAAATAAATCTAGAAGCTATAATATTAGCAACCAACAACTTTTCTGAAGATCATTGCATAGGTGCTGGAGGTTTTGGAAAGGTTTACAAAGGAGATCTACTACTTTCAGCGCGGATTACCACAGTTGCTTTAAAACGATTAGATCGTACGTTCGGGCAAGGAGATTCTGAGTTTTGGAAGGAGGTCATTATGCTCTCCCTCTACAGTCATGCAAATATCATATCCCTTTT...

Protein

Download Protein FASTA

462 aa · TkA01G022750|TK1151|PROTEIN

MSIDKQFQHLKINLEAIILATNNFSEDHCIGAGGFGKVYKGDLLLSARITTVALKRLDRTFGQGDSEFWKEVIMLSLYSHANIISLLGFCDEKGEKILVYEYLSRKGVHLYLDSNQLTWVQRLKICIGAAHGLAYLHDPDGKQQRVLHRDIKSSNILLAENWDAKIADFGLSKFGPANQQYTFIVSNNVAGTIGYCDPLYIESGLLTKESDVYSFGVTLFEVLCGRLCFAIDNKRQSFTKLVREGCKENNLDGIICDTIK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G022750
TK1151 IDTkA01G022750
OH-1004 IDLXL04_038622
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)79.800
Protein coverage (%)TK1151 100.000 / OH-1004 99.385
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G022750
LocationChr01:5823684-5825483 (-)
DescriptionSimilar to HERK1: Receptor-like protein kinase HERK 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g46290 Receptor-like protein kinase required for cell elongation during vegetative growth, mostly in a brassinosteroid-(BR-) independent manner.
Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana.2009 · DOI: 10.1073/pnas.0812346106
At1g30570 Probable receptor-like protein kinase At1g30570. No verified direct reference in this release
At5g59700 Probable receptor-like protein kinase At5g59700. No verified direct reference in this release
At5g39000 Putative receptor-like protein kinase At5g39000. No verified direct reference in this release
At5g38990 Probable receptor-like protein kinase At5g38990. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038622 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009741 response to brassinosteroid Biological Process
GO:0009826 unidimensional cell growth Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0010483 pollen tube reception Biological Process
GO:0046777 protein autophosphorylation Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0016324 apical plasma membrane Cellular Component
GO:0043680 filiform apparatus Cellular Component
GO:0090404 pollen tube tip Cellular Component
KEGG gene cross-reference
ath:AT1G30570
ath:AT3G46290
ath:AT5G28680
ath:AT5G54380
ath:AT5G59700
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.598
Rank 1 · TkA01G022750 · TK1151
Nucleus0.322
Rank 2 · TkA01G022750 · TK1151
Cell membrane0.235
Rank 3 · TkA01G022750 · TK1151
Endoplasmic reticulum0.047
Rank 4 · TkA01G022750 · TK1151
Golgi apparatus0.042
Rank 5 · TkA01G022750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase25-294 aa
PF03109ABC126-56 aa
PF07714PK_Tyr_Ser-Thr28-296 aa
PF03109ABC1143-180 aa
PF23733GRXCR1-2_C242-255 aa
PF03109ABC1337-364 aa
PF00462Glutaredoxin342-395 aa
PF23733GRXCR1-2_C419-461 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G022750PF00069Pkinase252943.4e-41142.1
TkA01G022750PF03109ABC126560.05213.4
TkA01G022750PF07714PK_Tyr_Ser-Thr282961.3e-41143.3
TkA01G022750PF03109ABC11431800.05213.4
TkA01G022750PF23733GRXCR1-2_C2422557.6e-1555.3
TkA01G022750PF03109ABC13373640.05213.4
TkA01G022750PF00462Glutaredoxin3423953.8e-0627.7
TkA01G022750PF23733GRXCR1-2_C4194617.6e-1555.3
TkA01G022750PF25436BSD2_CRD4194360.2412.3
TkA01G022750PF30084Ataxin_74284390.7310.6
TkA01G022750PF12760Zn_ribbon_IS15954284533.68.3
TkA01G022750PF25436BSD2_CRD4484610.2412.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LX66Arabidopsis thalianasp|Q9LX66|HERK_ARATH Receptor-like protein kinase HERK 144.800%Swiss-ProtMedium
Q9SA72Arabidopsis thalianasp|Q9SA72|Y1357_ARATH Probable receptor-like protein kinase At1g3057041.300%Swiss-ProtMedium
Q9FN92Arabidopsis thalianasp|Q9FN92|Y5597_ARATH Probable receptor-like protein kinase At5g5970045.300%Swiss-ProtMedium
Q9FID8Arabidopsis thalianasp|Q9FID8|Y5900_ARATH Putative receptor-like protein kinase At5g3900042.200%Swiss-ProtMedium
Q9FID9Arabidopsis thalianasp|Q9FID9|Y5389_ARATH Probable receptor-like protein kinase At5g3899041.300%Swiss-ProtMedium

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