TkA01G009070 | RubberDandelionOmics

Gene overview

TkA01G009070

Reference: TK1151 Chr: Chr01 Coordinates: 2441376-2442763 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

742 bp · TkA01G009070|TK1151|cDNA

GTCAATTGGTGAGGGTGTAACGCTTTTAACACCAAATAACAGGTCAAAGTCTTTTCTTCACGCCTTGTTCATCGTGCTGCCATTAATCCTCTCAGTAGTCAATCAACCATGGCAACCCACCCTAAATCCATCTACGATCTCACATTCAAGGACGCTAATGGAAACCAAGTGGATCTTGACATCTACAAAGGAAAAGTTCTACTTATAATCAATGTTGCCTCCAAATGTGGATTGACGAATTCCAACTATGCGGAATTAAA...

CDS

Download CDS FASTA

504 bp · TkA01G009070|TK1151|CDS

ATGGCAACCCACCCTAAATCCATCTACGATCTCACATTCAAGGACGCTAATGGAAACCAAGTGGATCTTGACATCTACAAAGGAAAAGTTCTACTTATAATCAATGTTGCCTCCAAATGTGGATTGACGAATTCCAACTATGCGGAATTAAACGAACTCTACGCAAAATACAACGATAAAGGTTTAGAGATATTAGCGTTTCCATGCAATCAATTTGGGGATGAAGAACCTGGGAGTAACGAGCAGATTCTGGAGTTTGT...

Protein

Download Protein FASTA

167 aa · TkA01G009070|TK1151|PROTEIN

MATHPKSIYDLTFKDANGNQVDLDIYKGKVLLIINVASKCGLTNSNYAELNELYAKYNDKGLEILAFPCNQFGDEEPGSNEQILEFVCTRYKSEFPIFDKIEVNGDNSSPLYKFLKSGKWGIFGDEIQWNFAKFLVDKNGQPVERYYPTTSPLTIELEVVFVMCREM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA01G009070`
TK1151 ID	TkA01G009070
OH-1004 ID	LXL04_005896
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	96.900
Protein coverage (%)	TK1151 95.210 / OH-1004 8.530 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA01G009070

Location Chr01:2441376-2442763 (-)

Description Similar to FTIP7: FT-interacting protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g63460`	May constitute a glutathione peroxidase-like protective system against oxidative stresses.	No verified direct reference in this release
`At4g11600`	Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_005896 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009663 plasmodesma organization Biological Process

GO:0009901 anther dehiscence Biological Process

GO:0010930 negative regulation of auxin mediated signaling pathway Biological Process

GO:1902182 shoot apical meristem development Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005768 endosome Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT1G51570

ath:AT3G57880

ath:AT4G11610

ath:AT5G12970

dosa:Os05g0370600

osa:4338582

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.643

Rank 1 · TkA01G009070 · TK1151

Nucleus0.213

Rank 2 · TkA01G009070 · TK1151

Mitochondrion0.126

Rank 3 · TkA01G009070 · TK1151

Endoplasmic reticulum0.088

Rank 4 · TkA01G009070 · TK1151

Cell membrane0.069

Rank 5 · TkA01G009070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00255GSHPx8-116 aa

PF00578AhpC-TSA9-70 aa

PF08534Redoxin10-67 aa

PF00578AhpC-TSA134-141 aa

PF08534Redoxin134-140 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA01G009070	`PF00255`	GSHPx	8	116	1.3e-43	147.7
TkA01G009070	`PF00578`	AhpC-TSA	9	70	5.1e-06	27.2
TkA01G009070	`PF08534`	Redoxin	10	67	8.2e-06	26.4
TkA01G009070	`PF00578`	AhpC-TSA	134	141	5.1e-06	27.2
TkA01G009070	`PF08534`	Redoxin	134	140	8.2e-06	26.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LBU2`	Arabidopsis thaliana	sp\|Q8LBU2\|GPX8_ARATH Probable glutathione peroxidase 8	76.900%	Swiss-Prot	High
`O48646`	Arabidopsis thaliana	sp\|O48646\|GPX6_ARATH Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial	69.000%	Swiss-Prot	High

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