Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1042 bp · TkA01G004390|TK1151|cDNA
CCGGACGGGGTAGGTGGTGGCTAGTCATAAATGGCGTACTGCGAATCGATATAATAATCGATCGATCCCTATCGCGAGGTATTCGACTACTCTCACATTCTTACAGACGCTTTGCAGGGGTTATCTGAGGTAAAATTCGACTTTCTTTTTCTCATTTTAGTTTGATTCCGATCGTTTTATGATACGTGTGATCGTTTTATCTGGTTCTCTGAGCTGATTTAAAACGAATTCGATTCTAGAGATCACATATAAAAATGAAG...
459 bp · TkA01G004390|TK1151|CDS
ATGAAGGCAGTTGCAGTTCTCAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTTGAACAAGTGAAAGAAGAGGATCCCACAACTGTTACTGGAAACCTTTCTGGCCTTAAACCCGGACCTCATGGTTTCCATGTTCATGCCCTTGGGGACACCACCAACGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCTGATGAAGAGGTTCGCCATGCTGGCGATCTTGGAAATGTTAC...
Protein
Download Protein FASTA152 aa · TkA01G004390|TK1151|PROTEIN
MKAVAVLNSSEGVSGTILFEQVKEEDPTTVTGNLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKEHGAPDEEVRHAGDLGNVTVGEDGTAKFTIIDKQIPLIGSQSIIGRAVVVHADADDLGKGGHELSKTTGNAGGRVACGIIGLQG
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G004390 |
|---|---|
| TK1151 ID | TkA01G004390 |
| OH-1004 ID | LXL04_004575 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 63.100 |
| Protein coverage (%) | TK1151 98.026 / OH-1004 66.667Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G004390 |
|---|---|
| Location | Chr01:1169671-1171956 (+) |
| Description | Similar to SODCP: Superoxide dismutase [Cu-Zn], chloroplastic |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006979 response to oxidative stress Biological Process GO:0009416 response to light stimulus Biological Process GO:0009651 response to salt stress Biological Process GO:0010039 response to iron ion Biological Process GO:0019430 removal of superoxide radicals Biological Process GO:0034599 cellular response to oxidative stress Biological Process GO:0035195 miRNA-mediated post-transcriptional gene silencing Biological Process GO:0046688 response to copper ion Biological Process GO:0071329 cellular response to sucrose stimulus Biological Process GO:0071457 cellular response to ozone Biological Process GO:0071472 cellular response to salt stress Biological Process GO:0071484 cellular response to light intensity Biological Process |
| KEGG gene cross-reference | ath:AT2G28190 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00080Sod_Cu13-148 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G004390 | PF00080 | Sod_Cu | 13 | 148 | 8.1e-52 | 175.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.